Variant report

Variant	rs17105187
Chromosome Location	chr14:68684200-68684201
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68677786..68680422-chr14:68681657..68685220,3	K562	blood:
2	chr14:68677499..68679438-chr14:68681011..68684595,6	MCF-7	breast:
3	chr14:68683371..68686097-chr14:69141858..69143811,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17105168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105211	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105241	0.93[AFR][1000 genomes]
rs4486809	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146865	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68675400-68690200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr14:68676200-68697600	Weak transcription	Ovary	ovary
3	chr14:68676800-68703000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:68678000-68686000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:68678000-68686200	Weak transcription	Aorta	Aorta
6	chr14:68678800-68697800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:68679200-68684200	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:68679200-68686400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr14:68681600-68698200	Weak transcription	Psoas Muscle	Psoas
10	chr14:68682000-68685000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:68682200-68685000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:68682200-68685200	Enhancers	Fetal Intestine Large	intestine
13	chr14:68682200-68685200	Enhancers	Fetal Intestine Small	intestine
14	chr14:68682400-68685000	Enhancers	K562	blood
15	chr14:68682400-68685200	Enhancers	Colon Smooth Muscle	Colon
16	chr14:68682400-68685800	Enhancers	Rectal Smooth Muscle	rectum
17	chr14:68682400-68686000	Weak transcription	Left Ventricle	heart
18	chr14:68682600-68685400	Enhancers	Fetal Lung	lung
19	chr14:68682800-68690600	Weak transcription	Stomach Mucosa	stomach
20	chr14:68683400-68684400	Enhancers	Small Intestine	intestine
21	chr14:68683400-68684600	Weak transcription	Fetal Heart	heart
22	chr14:68683600-68684200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr14:68683600-68684200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr14:68683600-68684400	Enhancers	Fetal Thymus	thymus
25	chr14:68683600-68684400	Enhancers	Stomach Smooth Muscle	stomach
26	chr14:68683600-68685200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:68683800-68684400	Enhancers	Lung	lung
28	chr14:68683800-68684400	Enhancers	Pancreas	Pancrea
29	chr14:68683800-68690200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr14:68683800-68690600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:68684000-68684200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:68684000-68684800	Weak transcription	Fetal Kidney	kidney
33	chr14:68684000-68690400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr14:68684000-68690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr14:68684200-68684400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr14:68684200-68685200	Enhancers	Fetal Muscle Leg	muscle
37	chr14:68684200-68685200	Enhancers	Fetal Stomach	stomach
38	chr14:68684200-68690000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr14:68684200-68690000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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