Variant report

Variant	rs17105168
Chromosome Location	chr14:68677080-68677081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68630159..68635177-chr14:68676158..68679265,4	MCF-7	breast:
2	chr14:68658576..68662447-chr14:68675524..68680933,7	MCF-7	breast:
3	chr14:68651948..68653688-chr14:68676457..68678591,2	MCF-7	breast:
4	chr14:68676342..68679181-chr14:69280243..69283048,2	MCF-7	breast:
5	chr14:68631219..68633531-chr14:68676403..68678551,2	MCF-7	breast:
6	chr14:68675578..68678555-chr14:69257522..69262810,5	MCF-7	breast:
7	chr14:68669045..68674295-chr14:68676334..68681130,6	MCF-7	breast:
8	chr14:68608519..68611286-chr14:68675156..68679124,3	MCF-7	breast:
9	chr14:68399385..68401473-chr14:68675864..68677382,2	MCF-7	breast:
10	chr14:68675359..68680545-chr14:68694673..68700591,7	MCF-7	breast:
11	chr14:68664407..68668795-chr14:68676202..68680269,4	MCF-7	breast:
12	chr14:68676010..68678265-chr14:68685689..68687728,2	MCF-7	breast:
13	chr14:68677034..68679384-chr14:68692756..68694845,2	MCF-7	breast:
14	chr14:68674867..68676643-chr14:68676816..68678381,2	MCF-7	breast:
15	chr14:68676724..68679537-chr14:68695696..68698941,3	MCF-7	breast:
16	chr14:68604554..68607336-chr14:68675149..68677760,3	MCF-7	breast:
17	chr14:68674848..68680641-chr14:69259721..69263504,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17105187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105211	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105241	0.93[AFR][1000 genomes]
rs4486809	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146865	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68674000-68677200	Enhancers	Osteobl	bone
2	chr14:68674000-68679200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr14:68674200-68677200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:68674800-68677200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr14:68675000-68677200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr14:68675000-68677200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:68675000-68677200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:68675000-68677200	Enhancers	Fetal Thymus	thymus
9	chr14:68675000-68677200	Enhancers	NHLF	lung
10	chr14:68675000-68677400	Enhancers	Small Intestine	intestine
11	chr14:68675000-68678000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:68675000-68679200	Enhancers	Fetal Muscle Leg	muscle
13	chr14:68675200-68677200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr14:68675200-68677200	Weak transcription	Adipose Nuclei	Adipose
15	chr14:68675200-68677200	Enhancers	Thymus	Thymus
16	chr14:68675200-68678000	Enhancers	Aorta	Aorta
17	chr14:68675400-68677200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:68675400-68677200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:68675400-68677200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr14:68675400-68677200	Enhancers	Right Atrium	heart
21	chr14:68675400-68677200	Weak transcription	A549	lung
22	chr14:68675400-68683600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr14:68675400-68690200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:68675600-68677200	Enhancers	Primary B cells from peripheral blood	blood
25	chr14:68675600-68677200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr14:68675600-68677200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr14:68675600-68677200	Enhancers	Psoas Muscle	Psoas
28	chr14:68675600-68677200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:68675600-68677200	Weak transcription	Spleen	Spleen
30	chr14:68675800-68677200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:68675800-68680800	Weak transcription	Right Ventricle	heart
32	chr14:68676000-68677200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:68676000-68677200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:68676000-68677400	Weak transcription	Brain Substantia Nigra	brain
35	chr14:68676200-68677200	Weak transcription	Colon Smooth Muscle	Colon
36	chr14:68676200-68677200	Weak transcription	Fetal Intestine Large	intestine
37	chr14:68676200-68677200	Enhancers	HSMM	muscle
38	chr14:68676200-68677400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr14:68676200-68677400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr14:68676200-68682200	Weak transcription	Left Ventricle	heart
41	chr14:68676200-68697600	Weak transcription	Ovary	ovary
42	chr14:68676400-68677200	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr14:68676400-68677200	Weak transcription	Fetal Heart	heart
44	chr14:68676400-68677200	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr14:68676400-68679200	Enhancers	Placenta Amnion	Placenta Amnion
46	chr14:68676600-68677200	Enhancers	Primary B cells from cord blood	blood
47	chr14:68676800-68677200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr14:68676800-68677200	Enhancers	Colonic Mucosa	Colon
49	chr14:68676800-68677200	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr14:68676800-68677200	Enhancers	Hela-S3	cervix

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