Variant report

Variant	rs7152570
Chromosome Location	chr14:68665710-68665711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68664407..68668795-chr14:68676202..68680269,4	MCF-7	breast:
2	chr14:68657499..68660189-chr14:68663923..68666460,2	MCF-7	breast:
3	chr14:68663778..68666037-chr14:68672996..68674515,2	MCF-7	breast:
4	chr14:68665613..68668039-chr14:68669771..68673430,3	MCF-7	breast:
5	chr14:68604727..68607514-chr14:68664007..68665710,2	MCF-7	breast:
6	chr14:68655074..68665772-chr14:68705598..68717948,30	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17105131	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105134	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105140	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105191	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105200	0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105229	0.93[LWK][hapmap];1.00[MEX][hapmap]
rs17105243	0.87[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap]
rs4427736	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4439690	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4584756	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146261	1.00[YRI][hapmap]
rs7493976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003433	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8011148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68647000-68676600	Weak transcription	Primary B cells from cord blood	blood
2	chr14:68649400-68677000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:68651200-68675000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68659000-68666200	Weak transcription	Ovary	ovary
5	chr14:68660600-68666200	Weak transcription	Psoas Muscle	Psoas
6	chr14:68661200-68666200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:68661400-68665800	Weak transcription	Fetal Lung	lung
8	chr14:68661400-68666400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr14:68661800-68665800	Weak transcription	Fetal Stomach	stomach
10	chr14:68662800-68667200	Enhancers	Fetal Intestine Small	intestine
11	chr14:68663000-68667200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:68663400-68666400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr14:68663400-68667000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr14:68663400-68667000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr14:68663600-68666600	Enhancers	Fetal Intestine Large	intestine
16	chr14:68663600-68667000	Enhancers	A549	lung
17	chr14:68663600-68667200	Enhancers	Liver	Liver
18	chr14:68664600-68667400	Enhancers	Colon Smooth Muscle	Colon
19	chr14:68664800-68665800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr14:68664800-68667200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr14:68665200-68666000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:68665200-68667000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:68665400-68666000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:68665400-68666200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:68665400-68666400	Enhancers	Rectal Smooth Muscle	rectum
26	chr14:68665400-68666400	Enhancers	HepG2	liver
27	chr14:68665400-68667200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr14:68665600-68665800	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr14:68665600-68666000	Enhancers	H1 Cell Line	embryonic stem cell
30	chr14:68665600-68666000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr14:68665600-68666000	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr14:68665600-68666200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:68665600-68666200	Enhancers	Aorta	Aorta
34	chr14:68665600-68666200	Enhancers	Duodenum Mucosa	Duodenum
35	chr14:68665600-68666200	Enhancers	Placenta Amnion	Placenta Amnion
36	chr14:68665600-68666400	Enhancers	Brain Anterior Caudate	brain
37	chr14:68665600-68666400	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr14:68665600-68666400	Enhancers	Fetal Kidney	kidney
39	chr14:68665600-68666400	Enhancers	Stomach Smooth Muscle	stomach
40	chr14:68665600-68666600	Enhancers	Thymus	Thymus
41	chr14:68665600-68666800	Enhancers	Primary T cells from cord blood	blood
42	chr14:68665600-68666800	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr14:68665600-68666800	Enhancers	Small Intestine	intestine
44	chr14:68665600-68667000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr14:68665600-68667000	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr14:68665600-68667000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:68665600-68667000	Enhancers	Fetal Muscle Leg	muscle
48	chr14:68665600-68667000	Enhancers	Stomach Mucosa	stomach
49	chr14:68665600-68667200	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr14:68665600-68667200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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