Variant report

Variant	rs17105423
Chromosome Location	chr14:37291360-37291361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1429846	1.00[EUR][1000 genomes]
rs17105080	1.00[TSI][hapmap]
rs17105258	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17105317	1.00[EUR][1000 genomes]
rs17105389	1.00[EUR][1000 genomes]
rs17105392	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17105396	1.00[EUR][1000 genomes]
rs17105467	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950353	1.00[EUR][1000 genomes]
rs2415362	1.00[EUR][1000 genomes]
rs55733140	1.00[EUR][1000 genomes]
rs6571763	1.00[EUR][1000 genomes]
rs712335	1.00[CHD][hapmap]
rs7153250	1.00[TSI][hapmap]
rs7158254	1.00[TSI][hapmap]
rs74044987	1.00[EUR][1000 genomes]
rs74045000	1.00[EUR][1000 genomes]
rs8007647	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1047409	chr14:37276300-37356945	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37285400-37291800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:37285600-37292200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:37289200-37291800	Enhancers	HMEC	breast
4	chr14:37289200-37291800	Enhancers	NHEK	skin
5	chr14:37290000-37291400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr14:37291000-37291600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:37291000-37292000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:37291000-37292200	Enhancers	Dnd41	blood
9	chr14:37291200-37292000	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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