Variant report

Variant	rs17106055
Chromosome Location	chr14:69091627-69091628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69083698..69085820-chr14:69090807..69092819,2	MCF-7	breast:
2	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:
3	chr14:69086671..69090212-chr14:69090936..69094755,4	K562	blood:
4	chr14:69087589..69092834-chr14:69093343..69096451,7	MCF-7	breast:
5	chr14:69085914..69087953-chr14:69091172..69093355,2	K562	blood:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000259038	Chromatin interaction

rs_ID	r²[population]
rs17106082	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17106245	1.00[AMR][1000 genomes]
rs17106249	1.00[AMR][1000 genomes]
rs4899248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902617	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74062911	1.00[AMR][1000 genomes]
rs8014510	1.00[AMR][1000 genomes]

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69085400-69095200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr14:69087000-69098400	Weak transcription	NHLF	lung
4	chr14:69087200-69095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:69087200-69095000	Weak transcription	Esophagus	oesophagus
6	chr14:69087400-69093800	Weak transcription	Primary B cells from cord blood	blood
7	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:69087800-69092800	Weak transcription	HepG2	liver
9	chr14:69088000-69092800	Weak transcription	K562	blood
10	chr14:69088200-69092000	Enhancers	Fetal Thymus	thymus
11	chr14:69088400-69092000	Weak transcription	Brain Substantia Nigra	brain
12	chr14:69088400-69093800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:69088400-69093800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:69088600-69092600	Weak transcription	Fetal Heart	heart
15	chr14:69088600-69093000	Weak transcription	Fetal Lung	lung
16	chr14:69088800-69092600	Weak transcription	Brain Hippocampus Middle	brain
17	chr14:69088800-69093000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:69088800-69093000	Weak transcription	Brain Anterior Caudate	brain
19	chr14:69088800-69093000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:69088800-69093000	Weak transcription	Psoas Muscle	Psoas
21	chr14:69088800-69093200	Weak transcription	Aorta	Aorta
22	chr14:69088800-69093200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr14:69088800-69093800	Weak transcription	Fetal Intestine Small	intestine
24	chr14:69088800-69093800	Weak transcription	Stomach Mucosa	stomach
25	chr14:69088800-69094000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr14:69089000-69091800	Weak transcription	Pancreas	Pancrea
27	chr14:69089000-69092400	Weak transcription	Left Ventricle	heart
28	chr14:69089000-69092400	Weak transcription	Right Atrium	heart
29	chr14:69089000-69092800	Weak transcription	Brain Angular Gyrus	brain
30	chr14:69089000-69093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:69089000-69093000	Weak transcription	Ovary	ovary
32	chr14:69089000-69094000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:69089000-69094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr14:69089000-69094000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:69089000-69094000	Weak transcription	Fetal Intestine Large	intestine
36	chr14:69089200-69092800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:69089200-69092800	Weak transcription	NHDF-Ad	bronchial
38	chr14:69089400-69094200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:69090000-69094800	Enhancers	Placenta	Placenta
40	chr14:69090200-69092600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr14:69090200-69092600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr14:69090200-69092800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr14:69090200-69093000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr14:69090200-69093000	Weak transcription	HSMMtube	muscle
45	chr14:69090200-69093200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:69090200-69093800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr14:69090400-69092400	Weak transcription	Right Ventricle	heart
48	chr14:69090400-69094200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr14:69090400-69094800	Weak transcription	Colon Smooth Muscle	Colon
50	chr14:69090600-69093400	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links