Variant report

Variant	rs17106249
Chromosome Location	chr14:69218963-69218964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69218946..69221608-chr14:69261319..69263953,3	K562	blood:
2	chr14:69217775..69219892-chr14:69226719..69229166,2	K562	blood:
3	chr14:69217473..69219591-chr14:69224474..69226175,2	MCF-7	breast:
4	chr14:69217090..69220380-chr14:69222883..69225939,5	K562	blood:
5	chr14:69218627..69226949-chr14:69256316..69264627,15	K562	blood:
6	chr14:69217466..69219911-chr14:69223716..69225939,2	K562	blood:
7	chr14:69218392..69222531-chr14:69227666..69230740,3	K562	blood:
8	chr14:69218208..69219054-chrX:130249585..130250410,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17106055	1.00[AMR][1000 genomes]
rs17106082	1.00[AMR][1000 genomes]
rs17106098	1.00[AMR][1000 genomes]
rs17106245	1.00[AMR][1000 genomes]
rs4899248	1.00[AMR][1000 genomes]
rs4902617	1.00[AMR][1000 genomes]
rs74062911	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523795	chr14:69216412-69219896	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv456332	chr14:69216412-69230080	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv564963	chr14:69216412-69230080	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69201200-69222600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:69202800-69224600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:69204200-69219200	Weak transcription	Adipose Nuclei	Adipose
4	chr14:69212600-69229200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:69214400-69221000	Weak transcription	Right Atrium	heart
6	chr14:69214600-69224600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:69214800-69219800	Weak transcription	Fetal Lung	lung
8	chr14:69215600-69222400	Weak transcription	Pancreas	Pancrea
9	chr14:69215800-69221000	Weak transcription	Spleen	Spleen
10	chr14:69215800-69222400	Weak transcription	Right Ventricle	heart
11	chr14:69216400-69219600	Weak transcription	Stomach Mucosa	stomach
12	chr14:69216400-69219800	Weak transcription	Fetal Kidney	kidney
13	chr14:69216600-69224200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr14:69217000-69222600	Weak transcription	Placenta	Placenta
15	chr14:69217400-69219000	Weak transcription	HepG2	liver
16	chr14:69218400-69219400	Enhancers	Ovary	ovary
17	chr14:69218400-69221200	Enhancers	Colon Smooth Muscle	Colon
18	chr14:69218600-69219200	Enhancers	Fetal Muscle Trunk	muscle
19	chr14:69218600-69230800	Enhancers	Fetal Muscle Leg	muscle
20	chr14:69218600-69231600	Enhancers	Fetal Heart	heart
21	chr14:69218800-69219200	Weak transcription	Left Ventricle	heart
22	chr14:69218800-69220400	Enhancers	K562	blood
23	chr14:69218800-69221200	Enhancers	Rectal Smooth Muscle	rectum
24	chr14:69218800-69221800	Enhancers	Fetal Stomach	stomach
25	chr14:69218800-69222800	Weak transcription	Lung	lung
26	chr14:69218800-69225600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr14:69218800-69230800	Enhancers	Fetal Intestine Small	intestine

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