Variant report

Variant	rs17106245
Chromosome Location	chr14:69206572-69206573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAL1	chr14:69206466-69206763	K562	blood:	n/a	n/a
2	CBX3	chr14:69206510-69206840	K562	blood:	n/a	n/a
3	RCOR1	chr14:69206510-69206650	K562	blood:	n/a	n/a
4	EP300	chr14:69206491-69206704	K562	blood:	n/a	n/a
5	TEAD4	chr14:69206443-69206739	K562	blood:	n/a	n/a
6	ARID3A	chr14:69206492-69206662	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69204312..69206697-chr14:69251799..69254255,2	K562	blood:
2	chr14:69206060..69208927-chr14:69216486..69218861,2	MCF-7	breast:
3	chr14:69206368..69210602-chr14:69212379..69216516,4	K562	blood:

No data

Variant related genes	Relation type
RNU6-921P	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17106055	1.00[AMR][1000 genomes]
rs17106082	1.00[AMR][1000 genomes]
rs17106098	1.00[AMR][1000 genomes]
rs17106249	1.00[AMR][1000 genomes]
rs4899248	1.00[AMR][1000 genomes]
rs4902617	1.00[AMR][1000 genomes]
rs74062911	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516770	chr14:69204868-69210059	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69198400-69214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:69199600-69206800	Enhancers	Fetal Muscle Leg	muscle
3	chr14:69200200-69207000	Enhancers	Fetal Stomach	stomach
4	chr14:69201200-69222600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:69202600-69209000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr14:69202800-69224600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:69203600-69213800	Weak transcription	Esophagus	oesophagus
8	chr14:69203800-69207200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:69203800-69207600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:69203800-69207600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:69203800-69208600	Weak transcription	Fetal Thymus	thymus
12	chr14:69204200-69219200	Weak transcription	Adipose Nuclei	Adipose
13	chr14:69204400-69213800	Weak transcription	Right Atrium	heart
14	chr14:69205000-69208000	Enhancers	K562	blood
15	chr14:69205000-69210400	Enhancers	Primary B cells from peripheral blood	blood
16	chr14:69205600-69214200	Weak transcription	Spleen	Spleen
17	chr14:69205600-69216200	Weak transcription	Lung	lung
18	chr14:69206000-69206600	Enhancers	Fetal Lung	lung
19	chr14:69206000-69206800	Enhancers	Fetal Kidney	kidney
20	chr14:69206200-69206800	Flanking Active TSS	Fetal Heart	heart
21	chr14:69206200-69207400	Weak transcription	Ovary	ovary
22	chr14:69206400-69206600	Enhancers	Placenta	Placenta
23	chr14:69206400-69207400	Weak transcription	HSMMtube	muscle

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