Variant report

Variant	rs17106347
Chromosome Location	chr14:37584981-37584982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:37579586..37581126-chr14:37583295..37585888,2	K562	blood:
2	chr14:37578874..37583867-chr14:37583944..37587801,9	MCF-7	breast:
3	chr14:37443180..37446784-chr14:37583565..37587987,4	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10130026	0.86[EUR][1000 genomes]
rs10133673	0.82[CHD][hapmap];0.83[GIH][hapmap]
rs10134334	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10140952	0.86[EUR][1000 genomes]
rs10141752	0.82[CHD][hapmap]
rs10459480	0.84[CHD][hapmap];0.83[GIH][hapmap]
rs10483485	0.82[CHD][hapmap];0.83[GIH][hapmap]
rs10483487	1.00[CEU][hapmap]
rs10483488	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11846358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12100470	0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12101262	1.00[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12884173	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17106252	0.82[MKK][hapmap]
rs17106290	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs17106327	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17106343	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17106358	1.00[CEU][hapmap]
rs17106368	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17106374	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17106381	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17106401	1.00[CEU][hapmap]
rs17106410	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17106412	1.00[CEU][hapmap]
rs17106437	1.00[CEU][hapmap]
rs17106466	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17106483	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17106486	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17106510	1.00[CEU][hapmap]
rs17106526	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs17106544	0.88[MEX][hapmap];1.00[TSI][hapmap]
rs17841015	0.82[CHD][hapmap]
rs1884221	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs1884777	0.84[CHD][hapmap]
rs1955757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1955759	1.00[CEU][hapmap]
rs1956424	0.82[CHD][hapmap];0.85[GIH][hapmap]
rs1956513	0.84[CHB][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs2078246	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs2180094	1.00[CEU][hapmap]
rs2415385	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2415387	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2415388	0.85[CHD][hapmap];0.83[GIH][hapmap]
rs4900678	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.98[ASN][1000 genomes]
rs4900688	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4906569	1.00[CEU][hapmap]
rs4906577	1.00[CEU][hapmap]
rs56184135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56933807	0.86[EUR][1000 genomes]
rs57235476	0.86[EUR][1000 genomes]
rs57843803	0.86[EUR][1000 genomes]
rs58473518	0.86[EUR][1000 genomes]
rs60921013	0.86[EUR][1000 genomes]
rs6571784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66496057	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66862591	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67441823	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7140725	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7140991	0.82[CHD][hapmap]
rs7143172	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7143753	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7145914	1.00[CEU][hapmap]
rs7149379	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7151756	1.00[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7152956	0.98[ASN][1000 genomes]
rs7153409	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[ASN][1000 genomes]
rs72669579	0.86[EUR][1000 genomes]
rs72669586	0.86[EUR][1000 genomes]
rs72669588	0.86[EUR][1000 genomes]
rs8005939	0.88[ASN][1000 genomes]
rs8007988	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs8008478	0.85[CHD][hapmap];1.00[GIH][hapmap]
rs8008737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014186	0.84[CHD][hapmap]
rs8015791	0.86[EUR][1000 genomes]
rs9888585	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564348	chr14:37584981-37608459	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37582400-37585400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr14:37582400-37587600	Enhancers	Hela-S3	cervix
3	chr14:37582400-37602800	Weak transcription	K562	blood
4	chr14:37583200-37585400	Weak transcription	Aorta	Aorta
5	chr14:37583400-37586200	Weak transcription	HSMMtube	muscle
6	chr14:37583800-37585600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:37583800-37586400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:37584000-37585400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:37584200-37585000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:37584200-37585400	Weak transcription	A549	lung
11	chr14:37584400-37585000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:37584400-37585400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:37584400-37585600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:37584800-37585600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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