Variant report

Variant	rs7153409
Chromosome Location	chr14:37587697-37587698
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:37578874..37583867-chr14:37583944..37587801,9	MCF-7	breast:
2	chr14:37443180..37446784-chr14:37583565..37587987,4	MCF-7	breast:
3	chr14:37587663..37589305-chr14:37591557..37593848,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10133673	0.82[CHD][hapmap]
rs10139302	1.00[CEU][hapmap];0.81[MKK][hapmap];0.94[EUR][1000 genomes]
rs10141752	0.82[CHD][hapmap];0.85[GIH][hapmap]
rs10148606	1.00[CEU][hapmap]
rs10459480	0.84[CHD][hapmap]
rs10483485	0.82[CHD][hapmap]
rs11846358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884173	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12889634	0.82[YRI][hapmap]
rs17106290	0.85[CHD][hapmap];0.85[GIH][hapmap]
rs17106347	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[ASN][1000 genomes]
rs17106526	1.00[CEU][hapmap]
rs17106544	1.00[CEU][hapmap]
rs17841015	0.82[CHD][hapmap];0.85[GIH][hapmap]
rs1884221	0.85[CHD][hapmap]
rs1884777	0.84[CHD][hapmap]
rs1955757	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1956424	0.82[CHD][hapmap];1.00[GIH][hapmap]
rs1956513	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs2078246	0.85[CHD][hapmap]
rs2415385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415388	0.85[CHD][hapmap]
rs4900678	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4906593	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[MKK][hapmap];0.83[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56184135	0.98[ASN][1000 genomes]
rs6571784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140991	0.82[CHD][hapmap]
rs7152956	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8005504	1.00[CEU][hapmap]
rs8005939	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8008478	0.85[CHD][hapmap];0.85[GIH][hapmap]
rs8008737	1.00[ASN][1000 genomes]
rs8014186	0.84[CHD][hapmap]
rs9888585	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564348	chr14:37584981-37608459	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7153409	DNAL1	trans	brain	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37582400-37602800	Weak transcription	K562	blood
2	chr14:37586200-37591000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:37586400-37588000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr14:37586800-37590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:37586800-37591600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:37587000-37591000	Weak transcription	HUVEC	blood vessel
7	chr14:37587000-37591000	Weak transcription	NH-A	brain
8	chr14:37587000-37591000	Weak transcription	NHEK	skin
9	chr14:37587000-37591200	Weak transcription	HMEC	breast
10	chr14:37587000-37591400	Weak transcription	HSMMtube	muscle
11	chr14:37587000-37595400	Weak transcription	Aorta	Aorta
12	chr14:37587200-37591000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:37587400-37591000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr14:37587600-37591200	Weak transcription	Hela-S3	cervix

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