Variant report

Variant	rs17106726
Chromosome Location	chr5:146806490-146806491
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12655492	0.85[CHB][hapmap]
rs12657083	0.85[CHB][hapmap]
rs12657176	0.83[CHB][hapmap]
rs12657809	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs13340333	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs1432852	0.91[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs1549915	0.83[YRI][hapmap]
rs17096661	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106713	0.86[CHB][hapmap];0.84[CHD][hapmap];0.80[ASN][1000 genomes]
rs17106716	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs17106723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17106725	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2163767	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2241696	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58013114	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60753325	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6897123	0.86[CHB][hapmap];0.85[CHD][hapmap];0.82[MEX][hapmap];0.80[ASN][1000 genomes]
rs73264219	0.89[ASN][1000 genomes]
rs73794718	0.88[AFR][1000 genomes]
rs73794720	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146769800-146810400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:146770200-146810800	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:146784800-146807400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:146785400-146808800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:146797200-146807200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:146797200-146808800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:146797200-146810800	Weak transcription	Brain Anterior Caudate	brain
8	chr5:146797400-146807400	Weak transcription	NHDF-Ad	bronchial
9	chr5:146797400-146810800	Weak transcription	Spleen	Spleen
10	chr5:146797800-146807200	Weak transcription	Psoas Muscle	Psoas
11	chr5:146797800-146811200	Weak transcription	Left Ventricle	heart
12	chr5:146798000-146810800	Weak transcription	Fetal Heart	heart
13	chr5:146798200-146806600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:146798200-146806600	Weak transcription	Fetal Stomach	stomach
15	chr5:146798200-146806600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:146798200-146806600	Weak transcription	NHLF	lung
17	chr5:146798200-146806600	Weak transcription	Osteobl	bone
18	chr5:146798200-146808800	Weak transcription	Adipose Nuclei	Adipose
19	chr5:146798200-146810600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr5:146798200-146811200	Weak transcription	Fetal Lung	lung
21	chr5:146798200-146815600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:146798400-146811200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:146798800-146811200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:146799000-146807200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:146799000-146808800	Weak transcription	Lung	lung
26	chr5:146799000-146818400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr5:146802000-146806600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:146802000-146808800	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr5:146802200-146807800	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr5:146802600-146808200	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr5:146803200-146810200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr5:146803400-146809000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:146803600-146811400	Weak transcription	Fetal Intestine Small	intestine
34	chr5:146803800-146808800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:146803800-146810400	Weak transcription	Fetal Muscle Leg	muscle
36	chr5:146804200-146810600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr5:146804400-146810800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr5:146804400-146815800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr5:146804600-146806600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr5:146804600-146810800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr5:146804800-146809400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr5:146804800-146809600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr5:146804800-146831600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr5:146805000-146807000	Weak transcription	NH-A	brain
45	chr5:146805000-146810800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:146805200-146810200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr5:146805400-146808200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr5:146805400-146808200	Enhancers	Ovary	ovary
49	chr5:146805800-146806800	Enhancers	Fetal Intestine Large	intestine
50	chr5:146805800-146807600	Enhancers	Primary neutrophils fromperipheralblood	blood

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