Variant report

Variant	rs17096661
Chromosome Location	chr5:146805550-146805551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10042298	1.00[CEU][hapmap]
rs10043932	1.00[CEU][hapmap]
rs10045916	1.00[CEU][hapmap]
rs10476887	1.00[CEU][hapmap]
rs11952440	1.00[CEU][hapmap]
rs11955404	1.00[CEU][hapmap]
rs12655492	0.85[CHB][hapmap]
rs12657083	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs12657176	0.83[CHB][hapmap]
rs12657809	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs13340333	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs1432852	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs1549915	1.00[CEU][hapmap]
rs17106713	0.86[CHB][hapmap];0.81[CHD][hapmap];0.80[ASN][1000 genomes]
rs17106716	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs17106723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17106725	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17106726	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2163767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2241696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3792839	1.00[CEU][hapmap]
rs58013114	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60753325	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6886313	1.00[CEU][hapmap]
rs6891468	1.00[CEU][hapmap]
rs6897123	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.82[MEX][hapmap];0.80[ASN][1000 genomes]
rs73264219	0.89[ASN][1000 genomes]
rs73794718	0.99[AFR][1000 genomes]
rs73794720	0.86[AFR][1000 genomes]
rs7737670	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146769800-146810400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:146770200-146810800	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:146784800-146807400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:146785400-146808800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:146797200-146807200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:146797200-146808800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:146797200-146810800	Weak transcription	Brain Anterior Caudate	brain
8	chr5:146797400-146807400	Weak transcription	NHDF-Ad	bronchial
9	chr5:146797400-146810800	Weak transcription	Spleen	Spleen
10	chr5:146797800-146806000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:146797800-146807200	Weak transcription	Psoas Muscle	Psoas
12	chr5:146797800-146811200	Weak transcription	Left Ventricle	heart
13	chr5:146798000-146805800	Weak transcription	Fetal Intestine Large	intestine
14	chr5:146798000-146810800	Weak transcription	Fetal Heart	heart
15	chr5:146798200-146806000	Weak transcription	Aorta	Aorta
16	chr5:146798200-146806200	Weak transcription	HUVEC	blood vessel
17	chr5:146798200-146806600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr5:146798200-146806600	Weak transcription	Fetal Stomach	stomach
19	chr5:146798200-146806600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:146798200-146806600	Weak transcription	NHLF	lung
21	chr5:146798200-146806600	Weak transcription	Osteobl	bone
22	chr5:146798200-146808800	Weak transcription	Adipose Nuclei	Adipose
23	chr5:146798200-146810600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr5:146798200-146811200	Weak transcription	Fetal Lung	lung
25	chr5:146798200-146815600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:146798400-146811200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr5:146798800-146811200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:146799000-146806000	Weak transcription	Right Atrium	heart
29	chr5:146799000-146807200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:146799000-146808800	Weak transcription	Lung	lung
31	chr5:146799000-146818400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr5:146801400-146805800	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr5:146802000-146806600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:146802000-146808800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr5:146802200-146807800	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr5:146802600-146808200	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr5:146803200-146806000	Weak transcription	Fetal Brain Male	brain
38	chr5:146803200-146810200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:146803400-146809000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr5:146803600-146811400	Weak transcription	Fetal Intestine Small	intestine
41	chr5:146803800-146808800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:146803800-146810400	Weak transcription	Fetal Muscle Leg	muscle
43	chr5:146804200-146805800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:146804200-146810600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:146804400-146805800	Weak transcription	Brain Germinal Matrix	brain
46	chr5:146804400-146805800	Weak transcription	Colon Smooth Muscle	Colon
47	chr5:146804400-146810800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr5:146804400-146815800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:146804600-146806000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr5:146804600-146806000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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