Variant report
| Variant | rs11952440 |
|---|---|
| Chromosome Location | chr5:146782588-146782589 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:146762800-146783400 | Weak transcription | Pancreas | Pancrea |
| 2 | chr5:146762800-146784200 | Weak transcription | Colonic Mucosa | Colon |
| 3 | chr5:146767800-146796600 | Strong transcription | Brain Germinal Matrix | brain |
| 4 | chr5:146768000-146784000 | Weak transcription | Brain Hippocampus Middle | brain |
| 5 | chr5:146768600-146783400 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 6 | chr5:146769000-146783000 | Strong transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 7 | chr5:146769400-146800600 | Strong transcription | HUES64 Cell Line | embryonic stem cell |
| 8 | chr5:146769800-146810400 | Strong transcription | iPS-20b Cell Line | embryonic stem cell |
| 9 | chr5:146770000-146800600 | Strong transcription | H1 Cell Line | embryonic stem cell |
| 10 | chr5:146770200-146784800 | Strong transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 11 | chr5:146770200-146805200 | Strong transcription | iPS-18 Cell Line | embryonic stem cell |
| 12 | chr5:146770200-146810800 | Strong transcription | HUES48 Cell Line | embryonic stem cell |
| 13 | chr5:146770400-146783000 | Strong transcription | Fetal Muscle Leg | muscle |
| 14 | chr5:146770400-146796600 | Strong transcription | Fetal Brain Female | brain |
| 15 | chr5:146770400-146800600 | Strong transcription | HUES6 Cell Line | embryonic stem cell |
| 16 | chr5:146770600-146782800 | Weak transcription | Fetal Heart | heart |
| 17 | chr5:146770600-146783200 | Strong transcription | Duodenum Smooth Muscle | Duodenum |
| 18 | chr5:146770600-146783400 | Strong transcription | Fetal Stomach | stomach |
| 19 | chr5:146770600-146798200 | Strong transcription | Breast Myoepithelial Primary Cells | Breast |
| 20 | chr5:146770600-146800400 | Strong transcription | ES-I3 Cell Line | embryonic stem cell |
| 21 | chr5:146771600-146786600 | Weak transcription | Gastric | stomach |
| 22 | chr5:146772000-146782600 | Strong transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 23 | chr5:146772400-146783800 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 24 | chr5:146772800-146783400 | Weak transcription | Brain Substantia Nigra | brain |
| 25 | chr5:146772800-146795600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 26 | chr5:146773400-146784000 | Weak transcription | Fetal Brain Male | brain |
| 27 | chr5:146773600-146788200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 28 | chr5:146773600-146800600 | Strong transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 29 | chr5:146774000-146799400 | Strong transcription | iPS-15b Cell Line | embryonic stem cell |
| 30 | chr5:146774200-146796800 | Weak transcription | Primary hematopoietic stem cells | blood |
| 31 | chr5:146774400-146783400 | Weak transcription | HMEC | breast |
| 32 | chr5:146774600-146783200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 33 | chr5:146774600-146784200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 34 | chr5:146775400-146797000 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 35 | chr5:146776000-146783600 | Weak transcription | Esophagus | oesophagus |
| 36 | chr5:146776200-146796000 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 37 | chr5:146777600-146796800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 38 | chr5:146777600-146800600 | Strong transcription | H9 Cell Line | embryonic stem cell |
| 39 | chr5:146777800-146783400 | Weak transcription | Left Ventricle | heart |
| 40 | chr5:146777800-146790400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 41 | chr5:146778400-146783200 | Weak transcription | Fetal Lung | lung |
| 42 | chr5:146778800-146783600 | Weak transcription | Right Ventricle | heart |
| 43 | chr5:146778800-146785000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 44 | chr5:146779800-146798400 | Strong transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 45 | chr5:146780200-146784600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 46 | chr5:146780400-146783200 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 47 | chr5:146780400-146796800 | Weak transcription | Spleen | Spleen |
| 48 | chr5:146780600-146783200 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 49 | chr5:146780600-146783400 | Weak transcription | Right Atrium | heart |
| 50 | chr5:146780600-146783600 | Weak transcription | Lung | lung |
