Variant report

Variant	rs10042298
Chromosome Location	chr5:146717349-146717350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10041697	0.82[JPT][hapmap]
rs10043932	1.00[CEU][hapmap]
rs10045916	1.00[CEU][hapmap]
rs10070932	0.87[JPT][hapmap];0.86[YRI][hapmap]
rs10079191	0.81[JPT][hapmap]
rs10476887	1.00[CEU][hapmap]
rs10477336	0.87[JPT][hapmap]
rs10515580	0.87[JPT][hapmap]
rs10515581	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10515582	0.93[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs10515583	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11167988	0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11167989	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs11748615	0.87[JPT][hapmap]
rs11952440	1.00[CEU][hapmap]
rs11954789	0.87[JPT][hapmap]
rs11955404	1.00[CEU][hapmap]
rs12514269	0.82[JPT][hapmap]
rs12514302	0.87[CHB][hapmap]
rs12518250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12519887	0.99[ASN][1000 genomes]
rs12520080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12520257	0.91[ASN][1000 genomes]
rs12520436	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12522616	1.00[ASN][1000 genomes]
rs12651731	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs12657083	1.00[CEU][hapmap]
rs12659468	0.88[JPT][hapmap]
rs13170279	0.82[JPT][hapmap]
rs1432838	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1432852	1.00[CEU][hapmap]
rs1432857	0.85[CHB][hapmap]
rs1544816	0.86[ASN][1000 genomes]
rs1549915	1.00[CEU][hapmap]
rs17096661	1.00[CEU][hapmap]
rs17106458	0.87[JPT][hapmap]
rs17106470	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17106482	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17106492	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17106560	0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs17106572	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs17106575	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs17106592	0.85[JPT][hapmap]
rs17106597	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs17106725	1.00[CEU][hapmap]
rs1895566	0.99[ASN][1000 genomes]
rs2163767	1.00[CEU][hapmap]
rs2288805	0.86[CHB][hapmap]
rs2288809	0.85[CHB][hapmap]
rs2400295	0.87[JPT][hapmap]
rs3213857	0.86[CHB][hapmap]
rs3749721	0.86[CHB][hapmap]
rs3792837	0.86[CHB][hapmap]
rs3792839	1.00[CEU][hapmap]
rs3805533	0.86[CHB][hapmap]
rs3805534	0.93[CHB][hapmap]
rs3805535	0.93[CHB][hapmap]
rs3805543	0.86[CHB][hapmap]
rs3805544	0.84[CHB][hapmap]
rs4705164	0.82[JPT][hapmap]
rs4705165	0.87[JPT][hapmap]
rs4705166	0.87[JPT][hapmap]
rs6872292	0.88[JPT][hapmap]
rs6884181	0.87[JPT][hapmap]
rs6886313	1.00[CEU][hapmap]
rs6891468	1.00[CEU][hapmap]
rs6897123	1.00[CEU][hapmap]
rs73262222	1.00[AFR][1000 genomes]
rs7707452	0.87[JPT][hapmap]
rs7714240	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7737670	1.00[CEU][hapmap]
rs918797	0.81[JPT][hapmap]
rs918798	0.87[JPT][hapmap]
rs972302	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs9885145	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146707600-146725600	Weak transcription	Pancreas	Pancrea
2	chr5:146713800-146720800	Weak transcription	Fetal Kidney	kidney
3	chr5:146715800-146717400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:146716200-146717600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:146716200-146717600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:146716400-146717400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:146716400-146717600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:146716400-146717600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:146716600-146717400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:146716600-146718600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr5:146716800-146717800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:146716800-146718800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:146717200-146717400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr5:146717200-146717600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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