Variant report

Variant	rs10476887
Chromosome Location	chr5:146760741-146760742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10042298	1.00[CEU][hapmap]
rs10043932	1.00[CEU][hapmap]
rs10045916	1.00[CEU][hapmap]
rs10065495	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10074141	1.00[AMR][1000 genomes]
rs10476886	1.00[AMR][1000 genomes]
rs11952440	1.00[CEU][hapmap]
rs11955404	1.00[CEU][hapmap]
rs12657083	1.00[CEU][hapmap]
rs1424294	1.00[AMR][1000 genomes]
rs1432852	1.00[CEU][hapmap]
rs1549915	1.00[CEU][hapmap]
rs17096661	1.00[CEU][hapmap]
rs17106455	1.00[AMR][1000 genomes]
rs17106725	1.00[CEU][hapmap]
rs2163767	1.00[CEU][hapmap]
rs28478946	1.00[AMR][1000 genomes]
rs3792839	1.00[CEU][hapmap]
rs6865466	1.00[AMR][1000 genomes]
rs6879511	1.00[AMR][1000 genomes]
rs6886313	1.00[CEU][hapmap]
rs6891468	1.00[CEU][hapmap]
rs6897123	1.00[CEU][hapmap]
rs7701219	1.00[AMR][1000 genomes]
rs7737670	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146747800-146762400	Weak transcription	Fetal Kidney	kidney
2	chr5:146750000-146766200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:146750400-146762000	Weak transcription	Aorta	Aorta
4	chr5:146755600-146762400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:146758200-146762400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:146759800-146762200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:146760000-146762400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:146760400-146761800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links