Variant report

Variant	rs12655492
Chromosome Location	chr5:146810267-146810268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12653560	1.00[MEX][hapmap]
rs12657083	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[ASN][1000 genomes]
rs12657176	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[ASN][1000 genomes]
rs1432853	1.00[MEX][hapmap]
rs1432854	1.00[MEX][hapmap];1.00[AFR][1000 genomes]
rs1432855	1.00[AFR][1000 genomes]
rs17096661	0.85[CHB][hapmap]
rs17106698	1.00[AFR][1000 genomes]
rs17106709	1.00[AFR][1000 genomes]
rs17106716	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17106723	0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs17106725	0.85[CHB][hapmap]
rs17106726	0.85[CHB][hapmap]
rs2163767	0.85[CHB][hapmap]
rs35439984	1.00[AFR][1000 genomes]
rs3805542	1.00[AFR][1000 genomes]
rs3805546	1.00[AFR][1000 genomes]
rs55689104	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58995894	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs59892472	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73264219	0.80[AMR][1000 genomes]
rs73264220	0.81[ASN][1000 genomes]
rs930213	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146769800-146810400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:146770200-146810800	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:146797200-146810800	Weak transcription	Brain Anterior Caudate	brain
4	chr5:146797400-146810800	Weak transcription	Spleen	Spleen
5	chr5:146797800-146811200	Weak transcription	Left Ventricle	heart
6	chr5:146798000-146810800	Weak transcription	Fetal Heart	heart
7	chr5:146798200-146810600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:146798200-146811200	Weak transcription	Fetal Lung	lung
9	chr5:146798200-146815600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:146798400-146811200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:146798800-146811200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:146799000-146818400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:146803600-146811400	Weak transcription	Fetal Intestine Small	intestine
14	chr5:146803800-146810400	Weak transcription	Fetal Muscle Leg	muscle
15	chr5:146804200-146810600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:146804400-146810800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:146804400-146815800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:146804600-146810800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:146804800-146831600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr5:146805000-146810800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr5:146805800-146819200	Enhancers	Colon Smooth Muscle	Colon
22	chr5:146806000-146812400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr5:146806000-146814800	Enhancers	Fetal Brain Male	brain
24	chr5:146806800-146810800	Weak transcription	Fetal Intestine Large	intestine
25	chr5:146806800-146811400	Enhancers	Rectal Smooth Muscle	rectum
26	chr5:146807600-146811000	Weak transcription	Fetal Stomach	stomach
27	chr5:146807600-146812800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr5:146808000-146810800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr5:146808000-146811200	Weak transcription	Aorta	Aorta
30	chr5:146808000-146811200	Weak transcription	NH-A	brain
31	chr5:146808000-146816200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr5:146808200-146810400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr5:146808200-146810800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:146808200-146810800	Weak transcription	Ovary	ovary
35	chr5:146808200-146811200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr5:146808200-146816400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:146808200-146816600	Weak transcription	Osteobl	bone
38	chr5:146808200-146818800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr5:146808800-146810800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:146809000-146810800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:146809000-146811200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr5:146809000-146811200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr5:146809000-146811200	Weak transcription	Lung	lung
44	chr5:146809000-146811200	Weak transcription	Psoas Muscle	Psoas
45	chr5:146809000-146811400	Weak transcription	Pancreas	Pancrea
46	chr5:146809000-146816600	Weak transcription	Esophagus	oesophagus
47	chr5:146809400-146810400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr5:146809400-146810800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr5:146809400-146811200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr5:146809400-146811400	Weak transcription	Right Atrium	heart

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