Variant report

Variant	rs17107215
Chromosome Location	chr10:93692480-93692481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93691322..93693028-chr10:93702196..93704196,2	K562	blood:
2	chr10:93691902..93694327-chr10:93711843..93714678,2	MCF-7	breast:
3	chr10:93682327..93685380-chr10:93690100..93694062,4	K562	blood:
4	chr10:93685141..93688099-chr10:93690647..93693379,2	MCF-7	breast:
5	chr10:93688641..93690594-chr10:93691267..93693874,2	K562	blood:
6	chr10:93688393..93689906-chr10:93691732..93693432,2	MCF-7	breast:
7	chr10:93681915..93684932-chr10:93689132..93694686,7	MCF-7	breast:
8	chr10:93692187..93693763-chr10:93702368..93703913,2	MCF-7	breast:
9	chr10:93691329..93694139-chr10:93698403..93701302,2	K562	blood:
10	chr10:93691319..93694139-chr10:93697959..93699903,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction

rs_ID	r²[population]
rs17107230	1.00[AMR][1000 genomes]
rs17107245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60926179	1.00[AMR][1000 genomes]
rs74149318	1.00[AMR][1000 genomes]
rs74149341	1.00[AMR][1000 genomes]
rs74149342	1.00[AMR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684200-93692600	Weak transcription	Spleen	Spleen
2	chr10:93684200-93694000	Weak transcription	Esophagus	oesophagus
3	chr10:93684400-93692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:93685000-93695600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:93685000-93695800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:93685000-93696000	Weak transcription	Aorta	Aorta
8	chr10:93685000-93696000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:93685000-93696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
11	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
13	chr10:93685200-93694400	Weak transcription	Fetal Kidney	kidney
14	chr10:93685200-93695400	Weak transcription	NH-A	brain
15	chr10:93685800-93695400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
17	chr10:93686000-93694200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:93686000-93695000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:93686600-93694000	Weak transcription	Thymus	Thymus
20	chr10:93686600-93694200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:93686600-93696000	Weak transcription	Brain Germinal Matrix	brain
22	chr10:93686800-93694200	Weak transcription	HMEC	breast
23	chr10:93686800-93695000	Weak transcription	Hela-S3	cervix
24	chr10:93686800-93695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:93687000-93695200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
27	chr10:93689200-93692800	Strong transcription	Primary B cells from cord blood	blood
28	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:93690200-93692600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:93690200-93692800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr10:93690200-93693000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr10:93690400-93692600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:93690400-93696000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:93690600-93692600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr10:93690600-93693000	Strong transcription	Primary B cells from peripheral blood	blood
37	chr10:93690600-93698600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:93690600-93702800	Strong transcription	Fetal Thymus	thymus
39	chr10:93690800-93693000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
40	chr10:93690800-93704000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
42	chr10:93691000-93693000	Strong transcription	Fetal Brain Female	brain
43	chr10:93691000-93695000	Weak transcription	HUVEC	blood vessel
44	chr10:93691000-93695800	Weak transcription	NHDF-Ad	bronchial
45	chr10:93691000-93697600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:93691000-93709600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:93691200-93692600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:93691200-93692600	Strong transcription	Adipose Nuclei	Adipose
49	chr10:93691200-93692800	Genic enhancers	Brain Inferior Temporal Lobe	brain
50	chr10:93691200-93692800	Strong transcription	Fetal Intestine Large	intestine

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