Variant report

Variant	rs74149342
Chromosome Location	chr10:93743388-93743389
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10882017	0.81[AFR][1000 genomes]
rs11186754	0.81[AFR][1000 genomes]
rs11186763	0.88[AFR][1000 genomes]
rs17107215	1.00[AMR][1000 genomes]
rs17107230	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107237	0.88[AFR][1000 genomes]
rs17107245	1.00[AMR][1000 genomes]
rs2421795	0.91[AFR][1000 genomes]
rs59490443	0.88[AFR][1000 genomes]
rs60926179	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074133	0.91[AFR][1000 genomes]
rs74149318	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149319	0.81[AFR][1000 genomes]
rs74149337	1.00[AFR][1000 genomes]
rs74149340	0.92[AFR][1000 genomes]
rs74149341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149344	1.00[AFR][1000 genomes]
rs74149345	1.00[AFR][1000 genomes]
rs74149346	1.00[AFR][1000 genomes]
rs74149347	1.00[AFR][1000 genomes]
rs74149348	1.00[AFR][1000 genomes]
rs74149349	1.00[AFR][1000 genomes]
rs74149350	1.00[AFR][1000 genomes]
rs74149351	1.00[AFR][1000 genomes]
rs74149352	0.91[AFR][1000 genomes]
rs74149353	0.91[AFR][1000 genomes]
rs74149354	0.91[AFR][1000 genomes]
rs74149355	0.84[AFR][1000 genomes]
rs74149357	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr10:93704800-93807400	Weak transcription	Gastric	stomach
4	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr10:93710000-93750200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:93713600-93744400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93714400-93743800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:93714600-93768000	Weak transcription	Right Ventricle	heart
9	chr10:93718400-93774000	Weak transcription	Spleen	Spleen
10	chr10:93719400-93761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:93720000-93757400	Weak transcription	Small Intestine	intestine
12	chr10:93720400-93757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
14	chr10:93724200-93748200	Weak transcription	Psoas Muscle	Psoas
15	chr10:93728000-93757400	Weak transcription	Fetal Brain Male	brain
16	chr10:93728600-93751600	Weak transcription	K562	blood
17	chr10:93729800-93765600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr10:93730200-93747000	Weak transcription	Fetal Stomach	stomach
19	chr10:93730400-93750200	Weak transcription	Fetal Intestine Small	intestine
20	chr10:93734600-93750200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:93734800-93763400	Strong transcription	Dnd41	blood
22	chr10:93735400-93750200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:93735800-93750600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:93736200-93749200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:93736200-93755400	Weak transcription	Esophagus	oesophagus
26	chr10:93736200-93784400	Weak transcription	Pancreas	Pancrea
27	chr10:93737400-93750800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:93737600-93745200	Strong transcription	Fetal Lung	lung
29	chr10:93738800-93746400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:93738800-93750200	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:93739400-93750200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr10:93739600-93746000	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:93739800-93745000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:93739800-93746200	Strong transcription	HepG2	liver
35	chr10:93739800-93746600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:93739800-93750000	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr10:93739800-93750000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:93740000-93744600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr10:93740000-93745400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:93740000-93745400	Strong transcription	Placenta	Placenta
41	chr10:93740000-93749800	Strong transcription	Primary B cells from cord blood	blood
42	chr10:93740000-93750000	Strong transcription	Primary T cells from cord blood	blood
43	chr10:93740000-93750200	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr10:93740000-93750200	Strong transcription	Liver	Liver
45	chr10:93740000-93750800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr10:93740200-93744200	Strong transcription	Colon Smooth Muscle	Colon
47	chr10:93740200-93745000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:93740200-93749600	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:93740200-93750000	Strong transcription	Primary hematopoietic stem cells	blood
50	chr10:93740200-93750000	Strong transcription	HSMM	muscle

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