Variant report

Variant	rs74149340
Chromosome Location	chr10:93733344-93733345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93732606..93734635-chr10:93744314..93746458,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10882017	0.88[AFR][1000 genomes]
rs11186754	0.88[AFR][1000 genomes]
rs11186763	0.81[AFR][1000 genomes]
rs17107230	0.84[AFR][1000 genomes]
rs17107237	0.81[AFR][1000 genomes]
rs2421795	0.84[AFR][1000 genomes]
rs59490443	0.96[AFR][1000 genomes]
rs60926179	0.84[AFR][1000 genomes]
rs7074133	0.84[AFR][1000 genomes]
rs74149318	0.84[AFR][1000 genomes]
rs74149319	0.88[AFR][1000 genomes]
rs74149337	0.92[AFR][1000 genomes]
rs74149341	0.92[AFR][1000 genomes]
rs74149342	0.92[AFR][1000 genomes]
rs74149344	0.92[AFR][1000 genomes]
rs74149345	0.92[AFR][1000 genomes]
rs74149346	0.92[AFR][1000 genomes]
rs74149347	0.92[AFR][1000 genomes]
rs74149348	0.92[AFR][1000 genomes]
rs74149349	0.92[AFR][1000 genomes]
rs74149350	0.92[AFR][1000 genomes]
rs74149351	0.92[AFR][1000 genomes]
rs74149352	0.84[AFR][1000 genomes]
rs74149353	0.84[AFR][1000 genomes]
rs74149354	0.84[AFR][1000 genomes]
rs74149355	0.84[AFR][1000 genomes]
rs74149357	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
2	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
3	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93696800-93735600	Weak transcription	Pancreas	Pancrea
5	chr10:93697000-93735600	Weak transcription	Esophagus	oesophagus
6	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr10:93704800-93807400	Weak transcription	Gastric	stomach
9	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr10:93709400-93740000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:93710000-93750200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:93710400-93736600	Strong transcription	Fetal Thymus	thymus
13	chr10:93710800-93736200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr10:93713600-93744400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:93714000-93734400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr10:93714400-93743800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:93714600-93768000	Weak transcription	Right Ventricle	heart
18	chr10:93715400-93741400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:93718400-93734200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:93718400-93774000	Weak transcription	Spleen	Spleen
21	chr10:93719000-93734200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:93719400-93761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:93720000-93735400	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:93720000-93741400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:93720000-93757400	Weak transcription	Small Intestine	intestine
26	chr10:93720200-93734200	Weak transcription	NHLF	lung
27	chr10:93720200-93741400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:93720400-93741800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:93720400-93757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:93720600-93742600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr10:93720600-93742800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:93721200-93734200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:93721200-93741200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:93721200-93742000	Weak transcription	Fetal Kidney	kidney
35	chr10:93721400-93742000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr10:93721600-93741600	Weak transcription	Brain Anterior Caudate	brain
37	chr10:93721600-93743200	Weak transcription	Lung	lung
38	chr10:93722200-93741400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr10:93722400-93741400	Weak transcription	Thymus	Thymus
40	chr10:93723800-93734200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:93723800-93743000	Weak transcription	Aorta	Aorta
42	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
43	chr10:93724200-93748200	Weak transcription	Psoas Muscle	Psoas
44	chr10:93724600-93741800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr10:93726000-93741800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:93726400-93734000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr10:93726400-93735800	Weak transcription	HSMMtube	muscle
48	chr10:93726400-93741800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr10:93726600-93742000	Weak transcription	Brain Germinal Matrix	brain
50	chr10:93727000-93740200	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links