Variant report

Variant	rs11186754
Chromosome Location	chr10:93688997-93688998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93687610..93690997-chr10:93694817..93697493,3	K562	blood:
2	chr10:93688641..93690594-chr10:93691267..93693874,2	K562	blood:
3	chr10:93688393..93689906-chr10:93691732..93693432,2	MCF-7	breast:
4	chr10:93669118..93670759-chr10:93686522..93689005,2	MCF-7	breast:
5	chr10:93682093..93684871-chr10:93687477..93689092,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000095564	Chromatin interaction

rs_ID	r²[population]
rs10882017	0.85[AFR][1000 genomes]
rs11186763	1.00[AMR][1000 genomes]
rs17107230	0.88[AFR][1000 genomes]
rs17107237	1.00[AMR][1000 genomes]
rs59490443	0.85[AFR][1000 genomes]
rs60926179	0.88[AFR][1000 genomes]
rs74149318	0.88[AFR][1000 genomes]
rs74149319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149337	0.81[AFR][1000 genomes]
rs74149340	0.88[AFR][1000 genomes]
rs74149341	0.81[AFR][1000 genomes]
rs74149342	0.81[AFR][1000 genomes]
rs74149344	0.81[AFR][1000 genomes]
rs74149345	0.81[AFR][1000 genomes]
rs74149346	0.81[AFR][1000 genomes]
rs74149347	0.81[AFR][1000 genomes]
rs74149348	0.81[AFR][1000 genomes]
rs74149349	0.81[AFR][1000 genomes]
rs74149350	0.81[AFR][1000 genomes]
rs74149351	0.81[AFR][1000 genomes]
rs74149355	0.81[AFR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93682800-93689400	Active TSS	GM12878-XiMat	blood
2	chr10:93684200-93691200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:93684200-93691200	Weak transcription	Gastric	stomach
4	chr10:93684200-93691800	Weak transcription	Lung	lung
5	chr10:93684200-93692600	Weak transcription	Spleen	Spleen
6	chr10:93684200-93694000	Weak transcription	Esophagus	oesophagus
7	chr10:93684400-93691200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:93684400-93692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:93684800-93689000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:93684800-93691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:93685000-93690000	Weak transcription	Fetal Stomach	stomach
13	chr10:93685000-93690000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr10:93685000-93690200	Weak transcription	Fetal Intestine Large	intestine
15	chr10:93685000-93690200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:93685000-93690200	Weak transcription	Stomach Mucosa	stomach
17	chr10:93685000-93691200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:93685000-93691200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:93685000-93691200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:93685000-93691200	Weak transcription	Brain Anterior Caudate	brain
21	chr10:93685000-93691200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:93685000-93691200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr10:93685000-93691200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:93685000-93691200	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:93685000-93691200	Weak transcription	Placenta	Placenta
26	chr10:93685000-93691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:93685000-93691400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:93685000-93691400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:93685000-93691400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:93685000-93691400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:93685000-93691400	Weak transcription	Fetal Intestine Small	intestine
32	chr10:93685000-93691400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr10:93685000-93695600	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr10:93685000-93695800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:93685000-93696000	Weak transcription	Aorta	Aorta
36	chr10:93685000-93696000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr10:93685000-93696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
39	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
41	chr10:93685200-93689600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:93685200-93690000	Weak transcription	NHDF-Ad	bronchial
43	chr10:93685200-93690200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr10:93685200-93691200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:93685200-93691200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:93685200-93691200	Weak transcription	Adipose Nuclei	Adipose
47	chr10:93685200-93691200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:93685200-93691400	Weak transcription	HSMMtube	muscle
49	chr10:93685200-93694400	Weak transcription	Fetal Kidney	kidney
50	chr10:93685200-93695400	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links