Variant report

Variant	rs10882017
Chromosome Location	chr10:93781456-93781457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93775489..93777686-chr10:93780974..93783915,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11186754	0.85[AFR][1000 genomes]
rs11186807	0.86[AFR][1000 genomes]
rs2421795	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59490443	0.85[AFR][1000 genomes]
rs7074133	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149319	0.85[AFR][1000 genomes]
rs74149337	0.81[AFR][1000 genomes]
rs74149340	0.88[AFR][1000 genomes]
rs74149341	0.81[AFR][1000 genomes]
rs74149342	0.81[AFR][1000 genomes]
rs74149344	0.81[AFR][1000 genomes]
rs74149345	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149346	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149347	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149348	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149349	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149350	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149351	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149352	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149353	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149354	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149355	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149357	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93704800-93807400	Weak transcription	Gastric	stomach
2	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
3	chr10:93736200-93784400	Weak transcription	Pancreas	Pancrea
4	chr10:93743000-93795000	Weak transcription	Stomach Mucosa	stomach
5	chr10:93743600-93786400	Weak transcription	Aorta	Aorta
6	chr10:93745000-93797200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:93749600-93792200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr10:93753600-93782400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:93754600-93783800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:93754800-93782000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:93755800-93784200	Weak transcription	Esophagus	oesophagus
12	chr10:93757800-93785000	Weak transcription	Small Intestine	intestine
13	chr10:93761200-93794600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:93765600-93792200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:93765800-93786400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:93767000-93784600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:93767400-93790000	Strong transcription	Fetal Thymus	thymus
18	chr10:93767600-93791000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:93767600-93794000	Strong transcription	Primary B cells from cord blood	blood
20	chr10:93768000-93792800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr10:93768000-93793000	Strong transcription	Primary B cells from peripheral blood	blood
22	chr10:93768000-93793200	Strong transcription	Placenta	Placenta
23	chr10:93768200-93796800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:93768400-93786400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:93768600-93790000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr10:93769600-93793600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:93769600-93793600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:93770200-93783000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:93770400-93785000	Weak transcription	Fetal Brain Male	brain
30	chr10:93770400-93794000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:93771800-93794800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:93772000-93794400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:93772200-93784200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:93772200-93789800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:93772200-93792200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr10:93772200-93793200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:93772200-93794400	Strong transcription	Liver	Liver
38	chr10:93772200-93794600	Strong transcription	Dnd41	blood
39	chr10:93772200-93794800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr10:93772400-93794000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr10:93772600-93793000	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr10:93772600-93794800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:93772600-93794800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr10:93772800-93788600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr10:93772800-93789800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:93772800-93789800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:93772800-93790000	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:93772800-93793000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:93772800-93793800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:93772800-93794000	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links