Variant report

Variant	rs74149357
Chromosome Location	chr10:93793898-93793899
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10882017	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11186763	0.85[AFR][1000 genomes]
rs11186807	0.85[AFR][1000 genomes]
rs17107237	0.85[AFR][1000 genomes]
rs2421795	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7074133	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149337	0.88[AFR][1000 genomes]
rs74149340	0.80[AFR][1000 genomes]
rs74149341	0.88[AFR][1000 genomes]
rs74149342	0.88[AFR][1000 genomes]
rs74149344	0.88[AFR][1000 genomes]
rs74149345	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149346	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149347	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149348	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149350	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149351	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149353	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149354	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149355	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93704800-93807400	Weak transcription	Gastric	stomach
2	chr10:93743000-93795000	Weak transcription	Stomach Mucosa	stomach
3	chr10:93745000-93797200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:93761200-93794600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr10:93767600-93794000	Strong transcription	Primary B cells from cord blood	blood
6	chr10:93768200-93796800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:93770400-93794000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:93771800-93794800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:93772000-93794400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:93772200-93794400	Strong transcription	Liver	Liver
11	chr10:93772200-93794600	Strong transcription	Dnd41	blood
12	chr10:93772200-93794800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:93772400-93794000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:93772600-93794800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr10:93772600-93794800	Strong transcription	Duodenum Mucosa	Duodenum
16	chr10:93772800-93794000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:93772800-93794400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:93774600-93805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:93781600-93794200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:93785200-93794400	Strong transcription	HSMM	muscle
21	chr10:93785200-93795600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:93785400-93802000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:93785800-93807600	Weak transcription	Pancreas	Pancrea
24	chr10:93786600-93807800	Weak transcription	Fetal Heart	heart
25	chr10:93786800-93804800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:93786800-93807600	Weak transcription	Aorta	Aorta
27	chr10:93787000-93796600	Weak transcription	Esophagus	oesophagus
28	chr10:93787200-93805400	Weak transcription	Right Ventricle	heart
29	chr10:93787200-93812200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:93787400-93794800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:93787400-93797800	Weak transcription	Brain Germinal Matrix	brain
32	chr10:93787400-93807600	Weak transcription	Spleen	Spleen
33	chr10:93787400-93811200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:93787400-93818400	Weak transcription	Colonic Mucosa	Colon
35	chr10:93787400-93840000	Weak transcription	Small Intestine	intestine
36	chr10:93787600-93795400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:93787600-93796800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr10:93787600-93798600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr10:93787600-93799200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr10:93787600-93828000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:93787800-93796600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr10:93788000-93812000	Weak transcription	Brain Anterior Caudate	brain
43	chr10:93788200-93804200	Weak transcription	NHLF	lung
44	chr10:93788400-93814200	Weak transcription	HepG2	liver
45	chr10:93788600-93794200	Strong transcription	Skeletal Muscle Female	skeletal muscle
46	chr10:93789000-93794800	Weak transcription	Fetal Brain Male	brain
47	chr10:93789200-93794400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr10:93789200-93794400	Weak transcription	HUVEC	blood vessel
49	chr10:93789600-93795200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr10:93789800-93816400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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