Variant report

Variant	rs17107321
Chromosome Location	chr10:89714246-89714247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89620282..89622359-chr10:89713432..89715194,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17107744	1.00[AFR][1000 genomes]
rs17108900	1.00[AFR][1000 genomes]
rs35846550	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1794722	chr10:89690827-89725294	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89663800-89725400	Weak transcription	Colonic Mucosa	Colon
2	chr10:89673600-89726000	Weak transcription	Brain Substantia Nigra	brain
3	chr10:89674800-89724400	Weak transcription	Fetal Brain Female	brain
4	chr10:89675400-89726000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:89683200-89715200	Weak transcription	Pancreas	Pancrea
6	chr10:89683200-89720800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:89683200-89723800	Weak transcription	Psoas Muscle	Psoas
8	chr10:89684000-89725600	Weak transcription	Gastric	stomach
9	chr10:89684000-89726200	Weak transcription	Spleen	Spleen
10	chr10:89687400-89715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:89687600-89725600	Weak transcription	Right Ventricle	heart
12	chr10:89690200-89725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr10:89692200-89724800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:89696000-89721000	Weak transcription	Brain Angular Gyrus	brain
15	chr10:89696600-89734600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:89698800-89725600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:89699000-89718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:89699000-89729200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:89700200-89723600	Weak transcription	Ovary	ovary
20	chr10:89701200-89725600	Weak transcription	Fetal Heart	heart
21	chr10:89702000-89715800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:89704800-89727000	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:89706200-89715200	Weak transcription	Esophagus	oesophagus
24	chr10:89706200-89715200	Weak transcription	Small Intestine	intestine
25	chr10:89706200-89723800	Weak transcription	Lung	lung
26	chr10:89706800-89715200	Weak transcription	Right Atrium	heart
27	chr10:89706800-89715200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:89708800-89714400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:89708800-89724000	Weak transcription	Left Ventricle	heart
30	chr10:89708800-89734400	Weak transcription	Aorta	Aorta
31	chr10:89709000-89724600	Weak transcription	K562	blood
32	chr10:89709200-89719800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:89709400-89724000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:89710000-89715400	Strong transcription	Fetal Thymus	thymus
35	chr10:89710000-89715600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:89710000-89715600	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr10:89710200-89715800	Strong transcription	Primary B cells from cord blood	blood
38	chr10:89710200-89716200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:89710400-89715400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr10:89710400-89715600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:89710400-89716600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:89710800-89714800	Strong transcription	HSMM	muscle
43	chr10:89710800-89714800	Strong transcription	NHLF	lung
44	chr10:89710800-89715600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:89711000-89715600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:89711000-89715600	Strong transcription	Fetal Lung	lung
47	chr10:89711000-89728000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr10:89711200-89714400	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr10:89711200-89714400	Strong transcription	Placenta	Placenta
50	chr10:89711200-89714600	Strong transcription	Primary T cells from cord blood	blood

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