Variant report

Variant	rs17107744
Chromosome Location	chr10:89766848-89766849
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17106914	0.83[AMR][1000 genomes]
rs17107094	0.83[AMR][1000 genomes]
rs17107321	1.00[AFR][1000 genomes]
rs17108900	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3387188	chr10:89743021-89767378	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89758400-89785800	Weak transcription	Aorta	Aorta
2	chr10:89765000-89768400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:89765000-89768400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:89765000-89768600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:89765000-89768600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:89765000-89769200	Weak transcription	Psoas Muscle	Psoas
7	chr10:89765000-89772000	Weak transcription	NHDF-Ad	bronchial
8	chr10:89765000-89774200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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