Variant report

Variant	rs17107737
Chromosome Location	chr11:107964945-107964946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107959572..107962405-chr11:107962851..107965555,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11827637	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11828981	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs12099180	1.00[YRI][hapmap]
rs17107678	0.84[AFR][1000 genomes]
rs7105261	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7951499	1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:107891000-107965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:107891200-107966200	Weak transcription	Small Intestine	intestine
4	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:107923800-107965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:107928200-107985200	Weak transcription	Psoas Muscle	Psoas
8	chr11:107938400-107968200	Weak transcription	Hela-S3	cervix
9	chr11:107941000-107971800	Weak transcription	NHEK	skin
10	chr11:107946200-107971200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:107946600-107986000	Weak transcription	Brain Angular Gyrus	brain
12	chr11:107947800-107965800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:107947800-107966000	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:107951000-107965600	Weak transcription	HMEC	breast
15	chr11:107951200-107965600	Weak transcription	NHLF	lung
16	chr11:107951400-107965800	Weak transcription	Colonic Mucosa	Colon
17	chr11:107953200-107991600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:107953400-107972000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:107953600-107965600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:107953600-107986000	Weak transcription	Pancreas	Pancrea
21	chr11:107954000-107967800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:107954200-107965600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:107954200-107967800	Weak transcription	HepG2	liver
24	chr11:107954600-107965600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:107954600-107965600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:107954600-107965800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:107954600-107965800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:107954800-107965400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:107954800-107972200	Weak transcription	Aorta	Aorta
30	chr11:107955200-107965600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:107955200-107965600	Weak transcription	Brain Anterior Caudate	brain
32	chr11:107955200-107972000	Weak transcription	Gastric	stomach
33	chr11:107955400-107965600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:107955400-107965600	Weak transcription	Fetal Brain Male	brain
35	chr11:107955600-107965400	Weak transcription	NH-A	brain
36	chr11:107955600-107965800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:107955800-107965800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:107955800-107967000	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:107955800-107991800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr11:107956000-107965800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:107956000-107966000	Weak transcription	Brain Substantia Nigra	brain
42	chr11:107956000-107971800	Weak transcription	Fetal Kidney	kidney
43	chr11:107958400-107977200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:107958600-107978200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr11:107958800-107980400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:107959000-107970800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:107959000-107976600	Strong transcription	Fetal Thymus	thymus
48	chr11:107959000-107977000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr11:107959200-107977000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:107959200-107977800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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