Variant report

Variant	rs7105261
Chromosome Location	chr11:107973831-107973832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11827637	0.86[AFR][1000 genomes]
rs11828981	0.94[AFR][1000 genomes]
rs12099180	0.86[AFR][1000 genomes]
rs17107678	0.94[AFR][1000 genomes]
rs17107737	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7101529	0.80[AFR][1000 genomes]
rs7927326	0.82[AFR][1000 genomes]
rs7951499	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1040522	chr11:107969357-108049672	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:107928200-107985200	Weak transcription	Psoas Muscle	Psoas
5	chr11:107946600-107986000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:107953200-107991600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:107953600-107986000	Weak transcription	Pancreas	Pancrea
8	chr11:107955800-107991800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:107958400-107977200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:107958600-107978200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:107958800-107980400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:107959000-107976600	Strong transcription	Fetal Thymus	thymus
13	chr11:107959000-107977000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:107959200-107977000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:107959200-107977800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:107960000-107977000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:107961400-107977800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:107961600-107976800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr11:107962200-107974400	Strong transcription	Dnd41	blood
20	chr11:107962200-107977000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:107962800-107977600	Weak transcription	Esophagus	oesophagus
22	chr11:107963600-107975400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:107963800-107975400	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr11:107964000-107976800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:107964000-107977200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:107964000-107978600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:107964600-107978000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:107965400-107975200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:107965400-107977200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr11:107965600-107974000	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:107965600-107974200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:107965600-107974200	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:107965600-107974800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:107965600-107975800	Strong transcription	Placenta	Placenta
35	chr11:107965600-107976000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:107965600-107976200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr11:107965600-107976800	Strong transcription	Liver	Liver
38	chr11:107965800-107974000	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:107965800-107974200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:107965800-107974400	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:107965800-107977200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:107966200-107982200	Weak transcription	Spleen	Spleen
43	chr11:107966200-107986000	Weak transcription	Brain Substantia Nigra	brain
44	chr11:107966400-107974600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr11:107966400-107992000	Weak transcription	Fetal Brain Male	brain
46	chr11:107966600-107974400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:107966600-107986000	Weak transcription	HMEC	breast
48	chr11:107967000-107991400	Weak transcription	A549	lung
49	chr11:107968200-107986000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr11:107968200-107986800	Weak transcription	Colonic Mucosa	Colon

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