Variant report

Variant	rs11828981
Chromosome Location	chr11:107882074-107882075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107859760..107861411-chr11:107880820..107882809,2	K562	blood:
2	chr11:107879008..107882817-chr11:107991227..107994837,4	K562	blood:
3	chr11:107858533..107861411-chr11:107880096..107882320,2	K562	blood:
4	chr11:107878216..107881089-chr11:107881577..107884403,2	MCF-7	breast:
5	chr11:107879008..107882104-chr11:107991227..107994837,4	K562	blood:

Variant related genes	Relation type
ENSG00000166266	Chromatin interaction
ENSG00000255467	Chromatin interaction
ENSG00000075239	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11827637	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12099180	0.91[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107678	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107737	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs7101529	0.83[AFR][1000 genomes]
rs7105261	0.94[AFR][1000 genomes]
rs7951499	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1047984	chr11:107794729-107950746	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv1040345	chr11:107824764-107924309	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107879000-107885200	Active TSS	GM12878-XiMat	blood
2	chr11:107879200-107882200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:107879200-107882200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr11:107879200-107882200	Active TSS	Ovary	ovary
5	chr11:107879200-107882400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:107879400-107882400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:107879400-107882800	Active TSS	K562	blood
8	chr11:107879600-107882400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:107880200-107882200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:107880400-107882400	Active TSS	Right Atrium	heart
11	chr11:107880600-107882200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr11:107880600-107882200	Flanking Active TSS	Fetal Kidney	kidney
13	chr11:107880600-107882200	Flanking Active TSS	Osteobl	bone
14	chr11:107880800-107882200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:107880800-107882200	Flanking Active TSS	HUVEC	blood vessel
16	chr11:107880800-107882400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:107880800-107883400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:107880800-107883600	Weak transcription	Spleen	Spleen
19	chr11:107880800-107888400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:107880800-107890600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:107881000-107882200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:107881000-107882200	Enhancers	Primary B cells from peripheral blood	blood
23	chr11:107881000-107882200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:107881000-107882200	Enhancers	Brain Substantia Nigra	brain
25	chr11:107881000-107882200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr11:107881000-107882200	Flanking Active TSS	NHEK	skin
27	chr11:107881000-107882400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:107881000-107883200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:107881000-107883400	Weak transcription	Gastric	stomach
30	chr11:107881000-107883400	Weak transcription	Left Ventricle	heart
31	chr11:107881000-107883600	Weak transcription	Esophagus	oesophagus
32	chr11:107881000-107883800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:107881000-107884800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:107881000-107885000	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr11:107881000-107886200	Weak transcription	Pancreas	Pancrea
36	chr11:107881000-107891000	Weak transcription	Lung	lung
37	chr11:107881000-107904000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:107881000-107904800	Weak transcription	Placenta	Placenta
39	chr11:107881200-107882200	Enhancers	Liver	Liver
40	chr11:107881200-107882200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr11:107881200-107882200	Enhancers	Fetal Heart	heart
42	chr11:107881200-107882200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
43	chr11:107881200-107882200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr11:107881200-107883200	Enhancers	Placenta Amnion	Placenta Amnion
45	chr11:107881200-107883800	Enhancers	Small Intestine	intestine
46	chr11:107881200-107884400	Enhancers	Fetal Brain Male	brain
47	chr11:107881200-107884800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr11:107881200-107885000	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr11:107881200-107885200	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr11:107881200-107885200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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