Variant report

Variant	rs7101529
Chromosome Location	chr11:107953387-107953388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:107878546..107881279-chr11:107951857..107954232,2	K562	blood:
2	chr11:107951132..107953473-chr11:107955215..107957362,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166266	Chromatin interaction
ENSG00000200855	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11828981	0.83[AFR][1000 genomes]
rs17107678	0.83[AFR][1000 genomes]
rs7105261	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv3372573	chr11:107880365-108022895	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv1039549	chr11:107950572-108034548	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107890800-107975200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:107891000-107965800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:107891200-107966200	Weak transcription	Small Intestine	intestine
4	chr11:107896600-107962000	Weak transcription	Right Ventricle	heart
5	chr11:107902600-107974400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:107903600-107957600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:107908200-107964000	Weak transcription	Fetal Heart	heart
8	chr11:107908400-107980600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:107914800-107955800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:107923800-107965800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:107928200-107953600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:107928200-107962000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:107928200-107985200	Weak transcription	Psoas Muscle	Psoas
14	chr11:107935200-107957600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:107935600-107954400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:107935800-107955800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:107938400-107968200	Weak transcription	Hela-S3	cervix
18	chr11:107940600-107956000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:107941000-107954800	Weak transcription	Stomach Mucosa	stomach
20	chr11:107941000-107971800	Weak transcription	NHEK	skin
21	chr11:107941200-107955400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr11:107941400-107957000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:107941600-107955800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:107942000-107954800	Strong transcription	Fetal Intestine Small	intestine
25	chr11:107942000-107955200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:107942000-107955800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:107942000-107955800	Strong transcription	Adipose Nuclei	Adipose
28	chr11:107942000-107955800	Strong transcription	Placenta	Placenta
29	chr11:107942000-107955800	Strong transcription	Fetal Thymus	thymus
30	chr11:107942000-107956000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:107942000-107956000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:107942200-107955600	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:107944200-107956000	Strong transcription	Liver	Liver
34	chr11:107944200-107956200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:107944800-107957200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:107946200-107971200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:107946600-107986000	Weak transcription	Brain Angular Gyrus	brain
38	chr11:107947600-107964800	Weak transcription	K562	blood
39	chr11:107947800-107953600	Weak transcription	Fetal Kidney	kidney
40	chr11:107947800-107965800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:107947800-107966000	Weak transcription	Colon Smooth Muscle	Colon
42	chr11:107948800-107956000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr11:107949400-107955400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:107949400-107955800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:107949600-107955200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:107949600-107955200	Strong transcription	Fetal Stomach	stomach
47	chr11:107949800-107955800	Strong transcription	Fetal Muscle Trunk	muscle
48	chr11:107950000-107955200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:107950000-107955800	Strong transcription	Primary B cells from peripheral blood	blood
50	chr11:107950000-107955800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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