Variant report

Variant	rs17108869
Chromosome Location	chr14:71471469-71471470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10133733	0.90[EUR][1000 genomes]
rs10137675	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10139448	0.83[EUR][1000 genomes]
rs10142792	0.83[EUR][1000 genomes]
rs10145022	0.84[EUR][1000 genomes]
rs10147124	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10148633	0.92[EUR][1000 genomes]
rs10220379	0.90[ASN][1000 genomes]
rs10483835	0.90[ASN][1000 genomes]
rs11846003	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11847244	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11849831	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12432180	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12432587	0.86[ASN][1000 genomes]
rs12433409	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12435253	0.96[ASN][1000 genomes]
rs12435675	0.96[EUR][1000 genomes]
rs12436649	0.83[EUR][1000 genomes]
rs12436920	0.83[ASN][1000 genomes]
rs12436970	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12436976	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12878013	0.96[EUR][1000 genomes]
rs12880918	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12884923	0.81[EUR][1000 genomes]
rs12886096	0.90[EUR][1000 genomes]
rs12888201	0.90[EUR][1000 genomes]
rs12891140	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12891245	0.96[EUR][1000 genomes]
rs12891445	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12892262	0.96[EUR][1000 genomes]
rs12894731	0.92[EUR][1000 genomes]
rs12895177	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12896855	0.92[ASN][1000 genomes]
rs1468469	0.92[ASN][1000 genomes]
rs17093729	0.92[ASN][1000 genomes]
rs17108694	0.90[EUR][1000 genomes]
rs17108711	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17108730	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17108753	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17108755	0.90[ASN][1000 genomes]
rs17108873	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17108897	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17109008	0.86[ASN][1000 genomes]
rs1978163	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2051865	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2158998	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2286312	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2286314	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2526891	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28371425	0.83[EUR][1000 genomes]
rs34007279	0.83[EUR][1000 genomes]
rs34119685	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34335220	0.83[EUR][1000 genomes]
rs34740221	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34785361	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34927411	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34968850	0.96[ASN][1000 genomes]
rs34971726	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34998980	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35041597	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35092982	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35127721	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35168506	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35523654	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35714454	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35725944	0.92[ASN][1000 genomes]
rs35840940	0.81[EUR][1000 genomes]
rs36089307	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4488390	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4614662	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902872	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902873	0.90[ASN][1000 genomes]
rs4902874	0.90[ASN][1000 genomes]
rs4902877	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902878	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902882	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902883	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902884	0.83[EUR][1000 genomes]
rs61990447	0.92[ASN][1000 genomes]
rs71425225	0.94[EUR][1000 genomes]
rs71425229	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71425386	0.90[ASN][1000 genomes]
rs71427104	0.96[EUR][1000 genomes]
rs7146777	0.85[ASN][1000 genomes]
rs7147788	0.83[EUR][1000 genomes]
rs7148530	0.86[ASN][1000 genomes]
rs7152435	0.86[ASN][1000 genomes]
rs7157279	0.83[EUR][1000 genomes]
rs7158548	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73297555	0.88[ASN][1000 genomes]
rs7492431	0.96[ASN][1000 genomes]
rs8015773	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs917066	0.90[ASN][1000 genomes]
rs9989203	0.83[EUR][1000 genomes]
rs9989204	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1039769	chr14:71310954-71525720	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv542128	chr14:71310954-71525720	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv565043	chr14:71395604-71625112	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1036929	chr14:71469148-71683412	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71426000-71508800	Weak transcription	Psoas Muscle	Psoas
2	chr14:71437200-71485600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:71438600-71502800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:71439200-71478000	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:71439600-71502800	Weak transcription	Small Intestine	intestine
6	chr14:71445200-71496200	Weak transcription	Fetal Brain Male	brain
7	chr14:71445200-71497800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:71445200-71502800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:71445200-71510800	Weak transcription	Colonic Mucosa	Colon
10	chr14:71445400-71479600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:71445400-71479800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr14:71445400-71479800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr14:71445400-71479800	Weak transcription	Thymus	Thymus
14	chr14:71445400-71479800	Weak transcription	HSMMtube	muscle
15	chr14:71445400-71480400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:71445400-71480400	Weak transcription	Left Ventricle	heart
17	chr14:71445400-71485600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:71445400-71498000	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:71445400-71502800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:71445600-71477400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr14:71445600-71477600	Weak transcription	Adipose Nuclei	Adipose
22	chr14:71445600-71479800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:71445600-71479800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:71445800-71471800	Weak transcription	Fetal Muscle Leg	muscle
25	chr14:71447800-71479800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:71448000-71479800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:71448000-71485800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:71454600-71480400	Weak transcription	Brain Angular Gyrus	brain
29	chr14:71455600-71471600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr14:71455600-71479800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr14:71455600-71497400	Weak transcription	Right Ventricle	heart
32	chr14:71456800-71478800	Weak transcription	Fetal Lung	lung
33	chr14:71460200-71480600	Weak transcription	Brain Anterior Caudate	brain
34	chr14:71461800-71485600	Weak transcription	Brain Germinal Matrix	brain
35	chr14:71462600-71472400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr14:71462600-71485600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr14:71462600-71486200	Weak transcription	Ovary	ovary
38	chr14:71462600-71497200	Weak transcription	Esophagus	oesophagus
39	chr14:71462800-71480400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr14:71462800-71497200	Weak transcription	Pancreas	Pancrea
41	chr14:71463000-71479600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:71463000-71479600	Weak transcription	Hela-S3	cervix
43	chr14:71463400-71479800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:71465600-71479600	Weak transcription	Fetal Thymus	thymus
45	chr14:71466600-71472400	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr14:71466600-71473000	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr14:71466600-71475200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr14:71466800-71473800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr14:71467800-71486000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr14:71468200-71472600	Strong transcription	Monocytes-CD14+_RO01746	blood

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