Variant report

Variant	rs8015773
Chromosome Location	chr14:71585151-71585152
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71580577..71583944-chr14:71584359..71586589,3	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10133733	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10137675	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10139448	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10142792	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10145022	0.84[EUR][1000 genomes]
rs10147124	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10162428	0.88[ASN][1000 genomes]
rs10220379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10483835	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11846003	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11847244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11849831	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12432180	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12432587	0.96[ASN][1000 genomes]
rs12433409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12435253	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12435675	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12436649	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12436920	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12436970	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12436976	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12878013	0.96[EUR][1000 genomes]
rs12880918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12884923	0.81[EUR][1000 genomes]
rs12886096	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12891140	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12891245	0.85[CEU][hapmap];0.96[EUR][1000 genomes]
rs12891445	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12895177	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12896855	0.83[ASN][1000 genomes]
rs1468469	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17093729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17108711	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17108730	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17108753	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17108755	0.85[ASN][1000 genomes]
rs17108869	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17108873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17108897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17109008	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1978163	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2051865	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2158998	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2286312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2286314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2526891	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28371425	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34007279	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34119685	0.92[ASN][1000 genomes]
rs34740221	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34785361	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34927411	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34968850	0.86[ASN][1000 genomes]
rs34971726	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34998980	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35041597	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35092982	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35127721	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35168506	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35523654	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35714454	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35725944	0.83[ASN][1000 genomes]
rs35840940	0.81[EUR][1000 genomes]
rs36089307	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4488390	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4614662	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902872	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4902874	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4902877	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902878	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902882	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902883	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61990447	0.94[ASN][1000 genomes]
rs71425229	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71425386	0.85[ASN][1000 genomes]
rs71427104	0.96[EUR][1000 genomes]
rs7146777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7147788	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7148530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7152435	0.96[ASN][1000 genomes]
rs7157279	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7158548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73297555	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7492431	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs8010701	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs917066	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs987579	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9989203	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9989204	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv565043	chr14:71395604-71625112	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1036929	chr14:71469148-71683412	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71552000-71588400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:71566800-71585800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr14:71572200-71585400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:71575800-71586600	Weak transcription	Right Ventricle	heart
5	chr14:71575800-71588200	Weak transcription	Aorta	Aorta
6	chr14:71575800-71589800	Weak transcription	Fetal Brain Female	brain
7	chr14:71576400-71590400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:71576800-71588200	Weak transcription	Spleen	Spleen
9	chr14:71576800-71597000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:71577000-71585200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:71577000-71585400	Weak transcription	Fetal Kidney	kidney
12	chr14:71577000-71586800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr14:71577000-71588200	Weak transcription	Lung	lung
14	chr14:71577000-71590800	Weak transcription	Brain Germinal Matrix	brain
15	chr14:71577600-71585200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:71577600-71585400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:71577600-71587400	Weak transcription	Primary T cells from cord blood	blood
18	chr14:71577600-71589600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr14:71577800-71587400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr14:71578200-71585600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:71578400-71587400	Weak transcription	A549	lung
22	chr14:71578400-71587800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr14:71578600-71586800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:71578600-71588600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr14:71581200-71586000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr14:71581200-71586800	Enhancers	HepG2	liver
27	chr14:71581200-71588800	Enhancers	Duodenum Mucosa	Duodenum
28	chr14:71581200-71588800	Enhancers	Fetal Intestine Large	intestine
29	chr14:71581600-71585400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:71581600-71586400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:71581600-71587400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr14:71581600-71590200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr14:71581800-71586800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:71582000-71585200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr14:71582200-71597400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:71582400-71597000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr14:71582600-71585600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr14:71582600-71585800	Enhancers	Colon Smooth Muscle	Colon
39	chr14:71582600-71597000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:71582800-71587600	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr14:71582800-71597200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr14:71583000-71586800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr14:71583000-71587000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr14:71583200-71585400	Enhancers	Hela-S3	cervix
45	chr14:71583400-71588000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr14:71583600-71588200	Weak transcription	Left Ventricle	heart
47	chr14:71583800-71585200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:71583800-71586600	Weak transcription	GM12878-XiMat	blood
49	chr14:71583800-71590400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr14:71584000-71585400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links