Variant report

Variant	rs4902884
Chromosome Location	chr14:71606276-71606277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:71605592..71606386-chr14:71869586..71870379,2	MCF-7	breast:
2	chr14:71605800..71606303-chr14:71871146..71871852,2	K562	blood:
3	chr14:71605403..71606379-chr14:72219242..72220271,11	MCF-7	breast:
4	chr14:71605416..71606618-chr14:72219460..72220340,5	MCF-7	breast:
5	chr14:71604707..71606600-chr14:72213499..72215384,2	MCF-7	breast:
6	chr14:71604769..71607668-chr14:71786929..71789620,2	MCF-7	breast:
7	chr14:71605537..71606405-chr14:72219506..72220423,5	K562	blood:
8	chr14:71605729..71607505-chr14:71785859..71787973,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction
ENSG00000259146	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10133733	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10139448	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10142792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145022	0.87[ASN][1000 genomes]
rs10147124	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10220379	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10483835	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11846003	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11847244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs11849831	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12432180	0.83[EUR][1000 genomes]
rs12432587	0.83[ASN][1000 genomes]
rs12433409	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs12435253	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs12435675	1.00[CEU][hapmap]
rs12436649	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436920	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12436970	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12436976	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12880918	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12884923	0.87[ASN][1000 genomes]
rs12886096	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12891140	0.83[EUR][1000 genomes]
rs12891245	0.85[CEU][hapmap]
rs12891445	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1468469	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs17093729	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs17108753	0.81[EUR][1000 genomes]
rs17108869	0.83[EUR][1000 genomes]
rs17108873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs17108897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17109008	0.87[ASN][1000 genomes]
rs1978163	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2051865	0.83[EUR][1000 genomes]
rs2158998	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2286312	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2286314	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2526891	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs28371425	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34007279	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34740221	0.83[EUR][1000 genomes]
rs34927411	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34971726	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34998980	0.83[EUR][1000 genomes]
rs35041597	0.83[EUR][1000 genomes]
rs35092982	0.83[EUR][1000 genomes]
rs35523654	0.83[EUR][1000 genomes]
rs35714454	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36089307	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4488390	0.83[EUR][1000 genomes]
rs4614662	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4902872	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902873	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4902874	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs4902877	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs4902878	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902882	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902883	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61990447	0.81[ASN][1000 genomes]
rs71425229	0.83[EUR][1000 genomes]
rs7146777	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs7147788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148530	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7152435	0.83[ASN][1000 genomes]
rs7157279	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158548	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs73297555	0.85[ASN][1000 genomes]
rs7492431	1.00[CHB][hapmap]
rs8010701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8015773	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs987579	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs9989203	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9989204	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv565043	chr14:71395604-71625112	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1036929	chr14:71469148-71683412	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv1044090	chr14:71496198-71780026	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71598400-71608600	Weak transcription	NHLF	lung
2	chr14:71604400-71606400	Enhancers	NH-A	brain
3	chr14:71604600-71608400	Weak transcription	Spleen	Spleen
4	chr14:71605200-71606400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:71605200-71606400	Enhancers	Hela-S3	cervix
6	chr14:71605400-71606600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:71605600-71606400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr14:71605600-71606400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:71605600-71606400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr14:71605600-71606400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:71605600-71606400	Enhancers	Adipose Nuclei	Adipose
12	chr14:71605600-71606400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr14:71605600-71606400	Enhancers	Fetal Intestine Large	intestine
14	chr14:71605600-71606600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:71605600-71606600	Enhancers	HSMMtube	muscle
16	chr14:71605600-71607200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:71605600-71607400	Enhancers	HepG2	liver
18	chr14:71605600-71613200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr14:71605600-71613400	Enhancers	Placenta	Placenta
20	chr14:71605800-71606400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:71605800-71606400	Enhancers	Liver	Liver
22	chr14:71605800-71606400	Active TSS	Brain Angular Gyrus	brain
23	chr14:71605800-71608400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:71605800-71608400	Weak transcription	HMEC	breast
25	chr14:71605800-71608800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr14:71605800-71608800	Weak transcription	HUVEC	blood vessel
27	chr14:71605800-71609400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:71606000-71606400	Enhancers	Colonic Mucosa	Colon
29	chr14:71606000-71606400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr14:71606000-71606400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr14:71606000-71606400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr14:71606000-71606600	Enhancers	H1 Cell Line	embryonic stem cell
33	chr14:71606000-71607200	Weak transcription	Fetal Intestine Small	intestine
34	chr14:71606000-71608400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:71606000-71608800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr14:71606000-71609000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr14:71606000-71610000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:71606000-71610000	Weak transcription	Stomach Mucosa	stomach
39	chr14:71606200-71606400	Active TSS	Brain Hippocampus Middle	brain
40	chr14:71606200-71606400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr14:71606200-71606400	Enhancers	NHDF-Ad	bronchial
42	chr14:71606200-71607200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr14:71606200-71607400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr14:71606200-71607800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:71606200-71608200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr14:71606200-71608200	Weak transcription	Osteobl	bone
47	chr14:71606200-71608400	Weak transcription	Primary T cells from cord blood	blood
48	chr14:71606200-71608400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr14:71606200-71608400	Weak transcription	NHEK	skin
50	chr14:71606200-71608600	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links