Variant report

Variant	rs17109049
Chromosome Location	chr14:39717002-39717003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17108840	1.00[MEX][hapmap]
rs17108884	1.00[MEX][hapmap]
rs17108885	1.00[MEX][hapmap]
rs17108962	1.00[MEX][hapmap]
rs17108984	1.00[MEX][hapmap]
rs17109037	1.00[MEX][hapmap]
rs17109079	0.81[ASW][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17109123	1.00[MEX][hapmap]
rs17109235	1.00[MEX][hapmap]
rs2415530	1.00[MEX][hapmap]
rs6571903	1.00[MEX][hapmap]
rs7144933	1.00[MEX][hapmap]
rs7150364	1.00[MEX][hapmap]
rs719456	1.00[MEX][hapmap]
rs8014741	1.00[MEX][hapmap]
rs8014887	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39708800-39718000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:39710000-39717400	Strong transcription	HepG2	liver
5	chr14:39711200-39719400	Strong transcription	Liver	Liver
6	chr14:39715600-39717200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:39715600-39717200	Enhancers	NHDF-Ad	bronchial
8	chr14:39715800-39717200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:39716000-39717200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:39716000-39717200	Strong transcription	Fetal Intestine Large	intestine
11	chr14:39716000-39717200	Enhancers	NHEK	skin
12	chr14:39716000-39718000	Weak transcription	Fetal Intestine Small	intestine
13	chr14:39716600-39717400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:39716800-39721400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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