Variant report

Variant	rs17109090
Chromosome Location	chr14:79822322-79822323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17109086	0.87[AFR][1000 genomes]
rs7149401	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74069725	1.00[AMR][1000 genomes]
rs74069732	1.00[AMR][1000 genomes]
rs74069735	1.00[AMR][1000 genomes]
rs74069738	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79792200-79825600	Weak transcription	Aorta	Aorta
2	chr14:79818400-79822600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:79818800-79834400	Weak transcription	NHLF	lung
4	chr14:79819000-79822600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:79819200-79822600	Weak transcription	Fetal Kidney	kidney
6	chr14:79819200-79822600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:79820400-79822400	Weak transcription	Colon Smooth Muscle	Colon
8	chr14:79820400-79823000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr14:79820800-79823000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr14:79820800-79823000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr14:79820800-79823000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:79821200-79822400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:79821400-79823000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:79821600-79823000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr14:79821800-79822800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:79821800-79823000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:79822000-79822400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:79822000-79822400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr14:79822000-79822400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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