Variant report

Variant	rs7149401
Chromosome Location	chr14:79835823-79835824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17109090	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74069725	1.00[AMR][1000 genomes]
rs74069732	1.00[AMR][1000 genomes]
rs74069735	1.00[AMR][1000 genomes]
rs74069738	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79834400-79836600	Enhancers	Rectal Smooth Muscle	rectum
2	chr14:79834600-79836600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr14:79834600-79837600	Enhancers	Colon Smooth Muscle	Colon
4	chr14:79835000-79836200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:79835200-79839400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:79835400-79836600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr14:79835400-79836600	Enhancers	HUVEC	blood vessel
8	chr14:79835400-79836600	Enhancers	Osteobl	bone
9	chr14:79835600-79836400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr14:79835600-79836600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr14:79835600-79836600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:79835600-79836600	Enhancers	NH-A	brain
13	chr14:79835600-79836600	Enhancers	NHEK	skin
14	chr14:79835800-79836200	Active TSS	A549	lung
15	chr14:79835800-79836400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:79835800-79836600	Enhancers	Hela-S3	cervix
17	chr14:79835800-79836600	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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