Variant report

Variant	rs74069735
Chromosome Location	chr14:79809238-79809239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17109090	1.00[AMR][1000 genomes]
rs60679807	0.89[AFR][1000 genomes]
rs7149401	1.00[AMR][1000 genomes]
rs74067995	0.89[AFR][1000 genomes]
rs74069725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74069732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74069738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530072	chr14:79769657-79928269	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902111	chr14:79807197-79890677	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv983971	chr14:79807305-79814454	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79792200-79825600	Weak transcription	Aorta	Aorta
2	chr14:79798800-79811600	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:79807200-79809600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr14:79807600-79809600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:79807800-79809400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr14:79808400-79809600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:79808400-79810000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr14:79808400-79810800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr14:79808600-79810800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:79809000-79809600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr14:79809000-79809600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr14:79809000-79810000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:79809000-79810200	Enhancers	Placenta	Placenta
14	chr14:79809000-79810400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:79809000-79810400	Enhancers	NHEK	skin
16	chr14:79809200-79809600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr14:79809200-79809600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:79809200-79809800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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