Variant report

Variant	rs17111477
Chromosome Location	chr1:94807859-94807860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17111243	1.00[LWK][hapmap];0.82[YRI][hapmap]
rs17111277	1.00[AMR][1000 genomes]
rs17111438	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17111528	1.00[AMR][1000 genomes]
rs17111561	1.00[AMR][1000 genomes]
rs17111563	1.00[AMR][1000 genomes]
rs17111571	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs17111580	1.00[AMR][1000 genomes]
rs17111588	1.00[AMR][1000 genomes]
rs17111600	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94799200-94812000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:94805600-94810400	Weak transcription	Stomach Mucosa	stomach
3	chr1:94806000-94810200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr1:94806200-94810200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr1:94806400-94808000	Weak transcription	Fetal Thymus	thymus
6	chr1:94806400-94814600	Weak transcription	Thymus	Thymus
7	chr1:94807600-94808800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:94807600-94808800	Enhancers	Fetal Intestine Large	intestine
9	chr1:94807600-94808800	Enhancers	HepG2	liver
10	chr1:94807800-94808000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:94807800-94808200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr1:94807800-94808200	Enhancers	Duodenum Mucosa	Duodenum
13	chr1:94807800-94808400	Enhancers	Fetal Intestine Small	intestine
14	chr1:94807800-94808400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:94807800-94808800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:94807800-94809000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:94807800-94811000	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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