The 2.0 version of rSNPBase

Variant report

Variant rs17111528
Chromosome Location chr1:94896926-94896927
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94885200-94907200 Weak transcription Primary T cells fromperipheralblood blood
2 chr1:94885200-94915000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:94888000-94902200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:94888200-94905400 Weak transcription Right Atrium heart
5 chr1:94888400-94914600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:94889000-94899200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr1:94889200-94914200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr1:94891400-94899200 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr1:94891800-94901400 Weak transcription Dnd41 blood
10 chr1:94892000-94901400 Weak transcription Primary T cells from cord blood blood
11 chr1:94892000-94905000 Weak transcription HMEC breast
12 chr1:94892400-94897200 Enhancers Liver Liver
13 chr1:94892400-94897400 Enhancers HepG2 liver
14 chr1:94892800-94900000 Weak transcription Brain Substantia Nigra brain
15 chr1:94892800-94901400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr1:94893000-94902400 Weak transcription Breast Myoepithelial Primary Cells Breast
17 chr1:94893400-94899200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:94893400-94903000 Weak transcription A549 lung
19 chr1:94894200-94903200 Weak transcription Osteobl bone
20 chr1:94894600-94914800 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:94895200-94899200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:94895400-94902400 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr1:94895400-94904200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
24 chr1:94895600-94897200 Weak transcription Lung lung
25 chr1:94895600-94897600 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr1:94895600-94897600 Weak transcription Stomach Mucosa stomach
27 chr1:94895600-94899200 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:94895600-94902200 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr1:94895600-94903000 Weak transcription Duodenum Mucosa Duodenum
30 chr1:94895600-94904000 Weak transcription Colonic Mucosa Colon
31 chr1:94895600-94905400 Weak transcription Gastric stomach
32 chr1:94895600-94905400 Weak transcription Left Ventricle heart
33 chr1:94895800-94905400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:94896200-94898400 Weak transcription Thymus Thymus
35 chr1:94896200-94898600 Weak transcription Fetal Thymus thymus
36 chr1:94896200-94898800 Weak transcription Pancreas Pancrea
37 chr1:94896200-94898800 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr1:94896600-94897000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr1:94896800-94897000 Enhancers Primary T helper cells PMA-I stimulated --
40 chr1:94896800-94897400 Enhancers Primary T killer memory cells from peripheral blood blood
41 chr1:94896800-94897600 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015