Variant report

Variant	rs17111721
Chromosome Location	chr14:81797292-81797293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81795898..81798803-chr14:81901525..81903894,2	MCF-7	breast:
2	chr14:81685823..81688070-chr14:81796081..81797670,2	MCF-7	breast:
3	chr14:81788554..81792307-chr14:81796466..81799026,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140022	Chromatin interaction
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11845580	1.00[EUR][1000 genomes]
rs11849005	1.00[EUR][1000 genomes]
rs17111553	1.00[EUR][1000 genomes]
rs17111687	1.00[EUR][1000 genomes]
rs17111693	1.00[EUR][1000 genomes]
rs7149494	1.00[EUR][1000 genomes]
rs7154235	1.00[EUR][1000 genomes]
rs8005247	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81778400-81810800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr14:81781000-81798400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr14:81791200-81803600	Weak transcription	K562	blood
4	chr14:81791400-81797400	Weak transcription	Psoas Muscle	Psoas
5	chr14:81791400-81797800	Weak transcription	Spleen	Spleen
6	chr14:81792400-81801600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:81795000-81798600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:81795200-81798000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:81795200-81798600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:81795600-81797800	Weak transcription	Esophagus	oesophagus
11	chr14:81796000-81799400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr14:81796200-81797400	Enhancers	Fetal Kidney	kidney
13	chr14:81796200-81798200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:81796200-81798400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:81796200-81798400	Enhancers	Brain Anterior Caudate	brain
16	chr14:81796400-81797600	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:81796400-81797800	Flanking Active TSS	NHEK	skin
18	chr14:81796600-81797600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr14:81796800-81799000	Enhancers	HMEC	breast
20	chr14:81796800-81799600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:81797000-81798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:81797000-81798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr14:81797000-81798200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:81797000-81798200	Enhancers	Fetal Intestine Small	intestine
25	chr14:81797000-81798400	Enhancers	Fetal Intestine Large	intestine
26	chr14:81797000-81798600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:81797200-81797600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr14:81797200-81797600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr14:81797200-81797600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:81797200-81797600	Enhancers	Fetal Brain Male	brain
31	chr14:81797200-81798000	Enhancers	Brain Substantia Nigra	brain
32	chr14:81797200-81798200	Enhancers	Brain Germinal Matrix	brain
33	chr14:81797200-81798400	Enhancers	Brain Hippocampus Middle	brain
34	chr14:81797200-81798600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:81797200-81798600	Enhancers	Fetal Muscle Leg	muscle

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