Variant report

Variant	rs17111553
Chromosome Location	chr14:81634156-81634157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81632442..81635113-chr14:81685395..81688602,3	K562	blood:
2	chr14:81632472..81635066-chr14:81638659..81640939,2	K562	blood:
3	chr14:81632445..81635289-chr14:81638847..81642115,4	K562	blood:
4	chr14:81634129..81641173-chr14:81683190..81688873,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10142430	1.00[AMR][1000 genomes]
rs17111638	1.00[MEX][hapmap]
rs17111668	1.00[MEX][hapmap]
rs17111687	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17111693	1.00[EUR][1000 genomes]
rs17111721	1.00[EUR][1000 genomes]
rs28507187	1.00[AMR][1000 genomes]
rs28712586	1.00[EUR][1000 genomes]
rs3783940	1.00[AMR][1000 genomes]
rs7149494	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs72627193	1.00[AMR][1000 genomes]
rs72627196	1.00[AMR][1000 genomes]
rs741651	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81619600-81636000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81629200-81635600	Weak transcription	Primary B cells from cord blood	blood
3	chr14:81629200-81636200	Weak transcription	Aorta	Aorta
4	chr14:81630000-81636000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr14:81630800-81635600	Weak transcription	Pancreas	Pancrea
6	chr14:81631000-81635000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr14:81631000-81635600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr14:81631000-81635600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:81631000-81635600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:81631000-81635600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:81631000-81635800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:81631000-81635800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:81631000-81635800	Weak transcription	Fetal Heart	heart
14	chr14:81631000-81636000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr14:81631000-81636000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:81631000-81636000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:81631000-81636000	Weak transcription	HMEC	breast
18	chr14:81631200-81636000	Weak transcription	Left Ventricle	heart
19	chr14:81631800-81635600	Weak transcription	Liver	Liver
20	chr14:81631800-81636200	Weak transcription	K562	blood
21	chr14:81632000-81635000	Weak transcription	Fetal Thymus	thymus
22	chr14:81632400-81635600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr14:81632600-81634800	Weak transcription	Dnd41	blood
24	chr14:81632600-81635600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:81633000-81634600	Weak transcription	HepG2	liver
26	chr14:81633000-81635600	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:81633000-81635600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:81633000-81635600	Weak transcription	Brain Substantia Nigra	brain
29	chr14:81633200-81635600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr14:81633400-81636000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr14:81633400-81636000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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