Variant report

Variant	rs10142430
Chromosome Location	chr14:81592730-81592731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10131452	0.95[ASN][1000 genomes]
rs10131719	0.95[ASN][1000 genomes]
rs10133928	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10147462	0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12323385	0.97[ASN][1000 genomes]
rs17111530	0.94[ASN][1000 genomes]
rs17111553	1.00[AMR][1000 genomes]
rs2273845	0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2284737	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2300537	0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28491084	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28507187	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28640259	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28661095	0.88[ASN][1000 genomes]
rs28701878	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28730923	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3783938	1.00[ASN][1000 genomes]
rs3783940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59500227	0.96[ASN][1000 genomes]
rs59645772	0.88[ASN][1000 genomes]
rs6574628	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7150881	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72627193	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72627194	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72627195	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72627196	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72627197	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72627198	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8020489	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81538200-81593000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81581000-81593200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:81590600-81593200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr14:81590800-81593200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:81592200-81593400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr14:81592200-81593600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr14:81592200-81597800	Weak transcription	Liver	Liver
8	chr14:81592200-81609000	Weak transcription	Thymus	Thymus
9	chr14:81592400-81601000	Weak transcription	Dnd41	blood

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