Variant report

Variant	rs72627198
Chromosome Location	chr14:81599401-81599402
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10131452	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10131719	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10133928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10142430	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10147462	0.90[ASN][1000 genomes]
rs12323385	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17111530	0.99[ASN][1000 genomes]
rs2273845	0.90[ASN][1000 genomes]
rs2284737	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2300537	0.88[ASN][1000 genomes]
rs28491084	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28507187	0.93[ASN][1000 genomes]
rs28640259	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28661095	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28701878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28730923	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3783938	0.94[ASN][1000 genomes]
rs3783940	0.93[ASN][1000 genomes]
rs59500227	0.94[ASN][1000 genomes]
rs59645772	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6574628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7150881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72627193	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72627194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72627195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72627196	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72627197	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8020489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81592200-81609000	Weak transcription	Thymus	Thymus
2	chr14:81592400-81601000	Weak transcription	Dnd41	blood
3	chr14:81597800-81600200	Enhancers	Liver	Liver
4	chr14:81598000-81599800	Enhancers	Fetal Brain Female	brain
5	chr14:81599200-81600200	Enhancers	Fetal Brain Male	brain

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