Variant report

Variant	rs28507187
Chromosome Location	chr14:81604727-81604728
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10131452	0.86[ASN][1000 genomes]
rs10131719	0.86[ASN][1000 genomes]
rs10133928	0.85[ASN][1000 genomes]
rs10142430	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10147462	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12323385	0.87[ASN][1000 genomes]
rs17111530	0.92[ASN][1000 genomes]
rs17111553	1.00[AMR][1000 genomes]
rs2273845	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2284737	0.89[ASN][1000 genomes]
rs2300537	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28491084	0.83[ASN][1000 genomes]
rs28640259	0.83[ASN][1000 genomes]
rs28661095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701878	0.89[ASN][1000 genomes]
rs28730923	0.84[ASN][1000 genomes]
rs3783938	0.88[ASN][1000 genomes]
rs3783940	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59500227	0.90[ASN][1000 genomes]
rs59645772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6574628	0.89[ASN][1000 genomes]
rs7150881	0.89[ASN][1000 genomes]
rs72627193	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72627194	0.89[ASN][1000 genomes]
rs72627195	0.89[ASN][1000 genomes]
rs72627196	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72627197	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs72627198	0.93[ASN][1000 genomes]
rs8020489	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81592200-81609000	Weak transcription	Thymus	Thymus
2	chr14:81600200-81611000	Weak transcription	Liver	Liver
3	chr14:81600800-81609400	Weak transcription	Fetal Thymus	thymus
4	chr14:81602000-81605800	Weak transcription	Dnd41	blood
5	chr14:81604400-81609600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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