Variant report

Variant rs17112588
Chromosome Location chr1:95335408-95335409
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95329000-95336000 Weak transcription Gastric stomach
2 chr1:95329000-95336200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:95329000-95338200 Weak transcription Esophagus oesophagus
4 chr1:95329000-95385000 Weak transcription Colonic Mucosa Colon
5 chr1:95330000-95344200 Strong transcription Fetal Intestine Large intestine
6 chr1:95330600-95343400 Strong transcription Rectal Mucosa Donor 29 rectum
7 chr1:95330600-95348000 Weak transcription HepG2 liver
8 chr1:95330800-95338200 Weak transcription Fetal Muscle Trunk muscle
9 chr1:95331000-95336400 Weak transcription HMEC breast
10 chr1:95331200-95338200 Weak transcription Lung lung
11 chr1:95331400-95338000 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr1:95331400-95338600 Weak transcription NHEK skin
13 chr1:95331400-95338800 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr1:95331400-95339800 Weak transcription Fetal Brain Male brain
15 chr1:95332000-95338200 Weak transcription Placenta Placenta
16 chr1:95332000-95338800 Weak transcription Right Ventricle heart
17 chr1:95332200-95336800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
18 chr1:95332200-95336800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr1:95332200-95338000 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr1:95332400-95336800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr1:95332400-95336800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr1:95332400-95338200 Weak transcription Brain Anterior Caudate brain
23 chr1:95332600-95344600 Strong transcription Duodenum Mucosa Duodenum
24 chr1:95333000-95336600 Weak transcription Fetal Muscle Leg muscle
25 chr1:95333000-95336600 Weak transcription HSMM muscle
26 chr1:95333000-95336600 Weak transcription NHLF lung
27 chr1:95333000-95336800 Weak transcription H1 Cell Line embryonic stem cell
28 chr1:95333000-95337000 Weak transcription H9 Cell Line embryonic stem cell
29 chr1:95333000-95337200 Weak transcription Fetal Kidney kidney
30 chr1:95333000-95338000 Weak transcription Brain Hippocampus Middle brain
31 chr1:95333000-95338200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
32 chr1:95333000-95338400 Weak transcription Brain Cingulate Gyrus brain
33 chr1:95333000-95338600 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr1:95333000-95338600 Weak transcription Rectal Smooth Muscle rectum
35 chr1:95333200-95336400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
36 chr1:95333200-95336400 Weak transcription NH-A brain
37 chr1:95333200-95336600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr1:95333200-95338200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr1:95333200-95338200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:95333200-95338200 Weak transcription Fetal Stomach stomach
41 chr1:95333200-95338600 Weak transcription Stomach Smooth Muscle stomach
42 chr1:95333200-95343400 Strong transcription Rectal Mucosa Donor 31 rectum
43 chr1:95333200-95370000 Weak transcription Small Intestine intestine
44 chr1:95333400-95336600 Weak transcription Osteobl bone
45 chr1:95334200-95337200 Strong transcription Pancreas Pancrea
46 chr1:95334200-95344200 Strong transcription Fetal Intestine Small intestine
47 chr1:95334400-95335800 Enhancers iPS-18 Cell Line embryonic stem cell
48 chr1:95334400-95338000 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr1:95334600-95336800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:95334800-95337400 Enhancers HSMMtube muscle

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