Variant report

Variant	rs9432398
Chromosome Location	chr1:95333986-95333987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13376582	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17112588	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28661447	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6677223	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6700314	0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9432602	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95336000	Weak transcription	Gastric	stomach
2	chr1:95329000-95336200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:95329000-95338200	Weak transcription	Esophagus	oesophagus
4	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
5	chr1:95330000-95344200	Strong transcription	Fetal Intestine Large	intestine
6	chr1:95330600-95343400	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr1:95330600-95348000	Weak transcription	HepG2	liver
8	chr1:95330800-95338200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:95331000-95336400	Weak transcription	HMEC	breast
10	chr1:95331200-95334400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:95331200-95334600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:95331200-95338200	Weak transcription	Lung	lung
13	chr1:95331400-95338000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:95331400-95338600	Weak transcription	NHEK	skin
15	chr1:95331400-95338800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr1:95331400-95339800	Weak transcription	Fetal Brain Male	brain
17	chr1:95332000-95334400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr1:95332000-95338200	Weak transcription	Placenta	Placenta
19	chr1:95332000-95338800	Weak transcription	Right Ventricle	heart
20	chr1:95332200-95334400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:95332200-95336800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:95332200-95336800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:95332200-95338000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr1:95332400-95334400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr1:95332400-95336800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr1:95332400-95336800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:95332400-95338200	Weak transcription	Brain Anterior Caudate	brain
28	chr1:95332600-95344600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr1:95332800-95334200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:95332800-95334600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr1:95333000-95334000	Weak transcription	Colon Smooth Muscle	Colon
32	chr1:95333000-95334400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:95333000-95334400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr1:95333000-95334400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr1:95333000-95334800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr1:95333000-95336600	Weak transcription	Fetal Muscle Leg	muscle
37	chr1:95333000-95336600	Weak transcription	HSMM	muscle
38	chr1:95333000-95336600	Weak transcription	NHLF	lung
39	chr1:95333000-95336800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr1:95333000-95337000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr1:95333000-95337200	Weak transcription	Fetal Kidney	kidney
42	chr1:95333000-95338000	Weak transcription	Brain Hippocampus Middle	brain
43	chr1:95333000-95338200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr1:95333000-95338400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr1:95333000-95338600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr1:95333000-95338600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr1:95333200-95334200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr1:95333200-95334200	Weak transcription	Pancreas	Pancrea
49	chr1:95333200-95334400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:95333200-95334400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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