Variant report

Variant	rs9432602
Chromosome Location	chr1:95339660-95339661
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95338959..95341374-chr1:95341499..95343991,2	MCF-7	breast:
2	chr1:95334598..95336510-chr1:95339074..95340675,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13376582	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17112588	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28661447	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6677223	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6700314	1.00[GIH][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9432398	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95330000-95344200	Strong transcription	Fetal Intestine Large	intestine
3	chr1:95330600-95343400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr1:95330600-95348000	Weak transcription	HepG2	liver
5	chr1:95331400-95339800	Weak transcription	Fetal Brain Male	brain
6	chr1:95332600-95344600	Strong transcription	Duodenum Mucosa	Duodenum
7	chr1:95333200-95343400	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr1:95333200-95370000	Weak transcription	Small Intestine	intestine
9	chr1:95334200-95344200	Strong transcription	Fetal Intestine Small	intestine
10	chr1:95336600-95342800	Enhancers	Fetal Muscle Leg	muscle
11	chr1:95336800-95342600	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr1:95337000-95341800	Weak transcription	Osteobl	bone
13	chr1:95337000-95342000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:95337200-95339800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr1:95337200-95340600	Weak transcription	Pancreas	Pancrea
16	chr1:95337200-95341200	Weak transcription	Gastric	stomach
17	chr1:95337600-95349000	Weak transcription	Fetal Kidney	kidney
18	chr1:95337800-95344400	Enhancers	HSMMtube	muscle
19	chr1:95338000-95340200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr1:95338000-95342000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr1:95338000-95342400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr1:95338200-95339800	Enhancers	Fetal Stomach	stomach
23	chr1:95338200-95339800	Enhancers	Placenta Amnion	Placenta Amnion
24	chr1:95338200-95340000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:95338200-95340000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:95338200-95340200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:95338200-95340200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr1:95338200-95340200	Enhancers	Brain Substantia Nigra	brain
29	chr1:95338200-95340400	Enhancers	Brain Anterior Caudate	brain
30	chr1:95338200-95340800	Enhancers	Fetal Muscle Trunk	muscle
31	chr1:95338200-95341600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:95338200-95342600	Enhancers	HUVEC	blood vessel
33	chr1:95338200-95344000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:95338400-95340000	Enhancers	Fetal Heart	heart
35	chr1:95338400-95340200	Enhancers	HSMM	muscle
36	chr1:95338600-95339800	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr1:95338600-95339800	Enhancers	NHEK	skin
38	chr1:95338600-95340000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:95338600-95340000	Enhancers	Colon Smooth Muscle	Colon
40	chr1:95338600-95340000	Enhancers	Left Ventricle	heart
41	chr1:95338600-95340000	Enhancers	Right Atrium	heart
42	chr1:95338600-95340000	Enhancers	Stomach Smooth Muscle	stomach
43	chr1:95338600-95340200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:95338600-95340200	Enhancers	Rectal Smooth Muscle	rectum
45	chr1:95338600-95340400	Enhancers	Brain Angular Gyrus	brain
46	chr1:95338600-95342200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:95338600-95342800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr1:95338800-95339800	Weak transcription	Esophagus	oesophagus
49	chr1:95338800-95340000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:95338800-95340000	Enhancers	Right Ventricle	heart

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