Variant report

Variant	rs17112991
Chromosome Location	chr5:151665871-151665872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1035401	0.87[ASN][1000 genomes]
rs17113042	0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17113105	0.87[ASN][1000 genomes]
rs17443704	0.96[ASN][1000 genomes]
rs17543712	0.87[ASN][1000 genomes]
rs2112538	0.87[ASN][1000 genomes]
rs2348648	0.87[ASN][1000 genomes]
rs56044017	0.96[ASN][1000 genomes]
rs72804364	0.91[ASN][1000 genomes]
rs72804371	0.96[ASN][1000 genomes]
rs72806351	0.87[ASN][1000 genomes]
rs72806363	0.87[ASN][1000 genomes]
rs72806364	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151665600-151667200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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