Variant report

Variant	rs72804364
Chromosome Location	chr5:151661003-151661004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1035401	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1363413	0.84[EUR][1000 genomes]
rs1592896	0.83[EUR][1000 genomes]
rs17112991	0.91[ASN][1000 genomes]
rs17113042	0.91[ASN][1000 genomes]
rs17113105	0.96[ASN][1000 genomes]
rs17443704	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17447016	0.82[EUR][1000 genomes]
rs17543712	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2112538	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2348648	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55726523	0.83[ASN][1000 genomes]
rs55917590	0.87[ASN][1000 genomes]
rs55920366	0.84[EUR][1000 genomes]
rs56044017	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72804360	0.93[EUR][1000 genomes]
rs72804371	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72806351	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72806361	0.91[EUR][1000 genomes]
rs72806363	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72806364	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72806368	0.90[EUR][1000 genomes]
rs72806402	0.87[EUR][1000 genomes]
rs72808307	0.85[EUR][1000 genomes]
rs72808310	0.84[EUR][1000 genomes]
rs72808320	0.84[EUR][1000 genomes]
rs72808322	0.84[EUR][1000 genomes]
rs72808324	0.84[EUR][1000 genomes]
rs72808326	0.84[EUR][1000 genomes]
rs72808328	0.84[EUR][1000 genomes]
rs72808330	0.84[EUR][1000 genomes]
rs766895	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151657600-151664000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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