Variant report

Variant	rs17443704
Chromosome Location	chr5:151668231-151668232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151668177..151670691-chr5:151675997..151677580,2	MCF-7	breast:
2	chr5:151572609..151573576-chr5:151667738..151668966,3	MCF-7	breast:
3	chr5:151523874..151524765-chr5:151668143..151669088,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1035401	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10515669	1.00[CHB][hapmap]
rs1363413	0.85[EUR][1000 genomes]
rs1592896	0.84[EUR][1000 genomes]
rs17112991	0.96[ASN][1000 genomes]
rs17113042	0.88[ASN][1000 genomes]
rs17113105	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17447016	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17543712	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2080930	1.00[CHB][hapmap]
rs2112538	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2194084	1.00[CHB][hapmap]
rs2348648	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4958537	1.00[CHB][hapmap]
rs4958543	1.00[CHB][hapmap]
rs55917590	0.84[ASN][1000 genomes]
rs55920366	0.85[EUR][1000 genomes]
rs56044017	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72804360	0.93[EUR][1000 genomes]
rs72804364	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72804371	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72806351	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72806361	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72806363	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72806364	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72806368	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72806402	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72808307	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72808310	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72808320	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72808322	0.85[EUR][1000 genomes]
rs72808324	0.85[EUR][1000 genomes]
rs72808326	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72808328	0.85[EUR][1000 genomes]
rs72808330	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs766895	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs982716	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151667000-151669000	Enhancers	Left Ventricle	heart
2	chr5:151667000-151669400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr5:151667200-151668600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr5:151667200-151669200	Enhancers	Right Atrium	heart
5	chr5:151667200-151669800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:151667400-151668600	Enhancers	Colon Smooth Muscle	Colon
7	chr5:151667800-151669400	Enhancers	Adipose Nuclei	Adipose
8	chr5:151668000-151668400	Enhancers	Fetal Muscle Trunk	muscle
9	chr5:151668000-151668400	Enhancers	Lung	lung
10	chr5:151668000-151668800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:151668000-151668800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:151668000-151668800	Enhancers	Fetal Stomach	stomach
13	chr5:151668000-151669000	Enhancers	Aorta	Aorta
14	chr5:151668000-151669000	Enhancers	Liver	Liver
15	chr5:151668000-151669000	Enhancers	Ovary	ovary
16	chr5:151668000-151669200	Enhancers	Fetal Muscle Leg	muscle
17	chr5:151668000-151669400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:151668200-151668800	Enhancers	Brain Anterior Caudate	brain
19	chr5:151668200-151669000	Enhancers	Duodenum Smooth Muscle	Duodenum

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