Variant report

Variant	rs1711433
Chromosome Location	chr11:102469281-102469282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102460887..102463879-chr11:102468746..102470729,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12418360	1.00[CHD][hapmap]
rs1631143	1.00[CHB][hapmap]
rs1711402	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1711440	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17352599	0.83[ASN][1000 genomes]
rs1784399	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1784411	1.00[CHB][hapmap]
rs1784443	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784450	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2243456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509014	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1711433	BIRC2	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102462200-102470000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:102464000-102470800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:102466000-102470600	Weak transcription	Small Intestine	intestine
4	chr11:102466800-102474200	Enhancers	HepG2	liver
5	chr11:102467200-102470000	Enhancers	A549	lung
6	chr11:102467600-102470800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:102468000-102470200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:102468200-102469400	Weak transcription	Fetal Intestine Small	intestine
9	chr11:102468800-102470200	Enhancers	HUVEC	blood vessel
10	chr11:102469000-102470600	Enhancers	Hela-S3	cervix
11	chr11:102469000-102470600	Enhancers	HMEC	breast
12	chr11:102469000-102470600	Enhancers	NH-A	brain
13	chr11:102469000-102471600	Enhancers	Fetal Intestine Large	intestine
14	chr11:102469200-102469600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:102469200-102470600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:102469200-102470600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:102469200-102470600	Enhancers	NHEK	skin
18	chr11:102469200-102470600	Enhancers	NHLF	lung
19	chr11:102469200-102470600	Enhancers	Osteobl	bone
20	chr11:102469200-102471600	Enhancers	NHDF-Ad	bronchial
21	chr11:102469200-102471800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:102469200-102471800	Enhancers	Stomach Mucosa	stomach
23	chr11:102469200-102475800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:102469200-102476200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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