Variant report

Variant	rs1631143
Chromosome Location	chr11:102457066-102457067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1320659	0.85[EUR][1000 genomes]
rs1624909	0.87[EUR][1000 genomes]
rs1630876	0.86[EUR][1000 genomes]
rs1711402	1.00[CHB][hapmap]
rs1711405	0.88[EUR][1000 genomes]
rs1711406	0.88[EUR][1000 genomes]
rs1711407	0.88[EUR][1000 genomes]
rs1711419	0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1711424	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1711428	0.86[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1711433	1.00[CHB][hapmap]
rs1784401	0.88[EUR][1000 genomes]
rs1784402	0.88[EUR][1000 genomes]
rs1784404	0.87[EUR][1000 genomes]
rs1784411	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784414	0.88[EUR][1000 genomes]
rs1784416	0.83[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs1784443	1.00[CHB][hapmap]
rs1940046	0.84[EUR][1000 genomes]
rs1940047	0.85[EUR][1000 genomes]
rs1940049	0.85[EUR][1000 genomes]
rs1940050	0.85[EUR][1000 genomes]
rs2009487	0.85[EUR][1000 genomes]
rs2009489	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs2009659	0.85[EUR][1000 genomes]
rs2245697	0.87[EUR][1000 genomes]
rs2245897	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2459474	0.85[EUR][1000 genomes]
rs2459476	0.87[EUR][1000 genomes]
rs2459477	0.86[EUR][1000 genomes]
rs2464354	0.87[EUR][1000 genomes]
rs2464355	0.87[EUR][1000 genomes]
rs2464356	0.85[EUR][1000 genomes]
rs2464357	0.85[EUR][1000 genomes]
rs2464358	0.85[EUR][1000 genomes]
rs2464359	0.85[EUR][1000 genomes]
rs2464360	0.85[EUR][1000 genomes]
rs2509022	0.87[EUR][1000 genomes]
rs2509023	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs2509024	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2701965	0.85[EUR][1000 genomes]
rs2701966	0.85[EUR][1000 genomes]
rs2701967	0.85[EUR][1000 genomes]
rs2701968	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2701969	0.85[EUR][1000 genomes]
rs2701971	0.85[EUR][1000 genomes]
rs2701973	0.84[EUR][1000 genomes]
rs2701974	0.84[EUR][1000 genomes]
rs2701975	0.83[EUR][1000 genomes]
rs2846344	0.83[EUR][1000 genomes]
rs2846345	0.83[EUR][1000 genomes]
rs2846346	0.85[EUR][1000 genomes]
rs2846347	0.85[EUR][1000 genomes]
rs7116246	0.87[EUR][1000 genomes]
rs7116339	1.00[JPT][hapmap]
rs7939183	1.00[JPT][hapmap]
rs7939224	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102451400-102462600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:102451600-102463600	Weak transcription	NHDF-Ad	bronchial
3	chr11:102454600-102461000	Weak transcription	Primary monocytes fromperipheralblood	blood

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