Variant report

Variant	rs1784416
Chromosome Location	chr11:102486282-102486283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102485385..102487905-chr11:102489237..102492124,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1320659	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1624909	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1630876	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1631143	0.83[CEU][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs1711405	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711406	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711407	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1711419	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1711424	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1711428	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1784401	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1784402	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1784404	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1784411	0.85[JPT][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs1784414	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1940046	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1940047	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1940049	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1940050	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2009487	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2009489	0.94[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2009659	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2245697	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2245897	0.94[CEU][hapmap];0.97[GIH][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2459474	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2459476	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2459477	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2464351	0.86[EUR][1000 genomes]
rs2464353	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2464354	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2464355	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2464356	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2464357	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2464358	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2464359	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2464360	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2509022	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2509023	0.94[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2509024	0.94[CEU][hapmap];0.97[GIH][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2701965	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2701966	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2701967	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2701968	0.94[CEU][hapmap];0.97[GIH][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2701969	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2701971	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2701972	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2701973	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2701974	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2701975	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2846344	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2846345	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2846346	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2846347	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61138073	0.81[ASN][1000 genomes]
rs7116246	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7116339	0.85[JPT][hapmap]
rs7939183	0.85[JPT][hapmap]
rs7939224	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1815657	chr11:102413582-102490794	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102474600-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:102476000-102486400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:102476600-102486400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:102483800-102487000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:102484000-102486400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr11:102484000-102486600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:102484000-102486600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:102484000-102486600	Weak transcription	Hela-S3	cervix
9	chr11:102484000-102487200	Enhancers	A549	lung
10	chr11:102484200-102488600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:102484200-102491200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:102484400-102488400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:102484600-102487000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:102484800-102486600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:102484800-102486800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr11:102485000-102486600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr11:102485600-102487000	Enhancers	HUVEC	blood vessel
18	chr11:102485600-102490800	Weak transcription	Fetal Intestine Large	intestine
19	chr11:102485600-102492800	Weak transcription	Fetal Intestine Small	intestine
20	chr11:102486200-102486400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr11:102486200-102486400	Enhancers	Liver	Liver
22	chr11:102486200-102486400	Enhancers	Gastric	stomach
23	chr11:102486200-102486600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:102486200-102486600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:102486200-102486800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:102486200-102486800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:102486200-102486800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:102486200-102486800	Flanking Active TSS	HepG2	liver
29	chr11:102486200-102487000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:102486200-102487000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:102486200-102487000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:102486200-102487000	Enhancers	Lung	lung
33	chr11:102486200-102487000	Enhancers	HSMMtube	muscle
34	chr11:102486200-102487800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:102486200-102488600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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